Hb_000002_020

Information

Type -
Description -
Location Contig2: 39744-42258
Sequence    

Annotation

kegg
ID rcu:RCOM_1104330
description Cell division control protein, putative
nr
ID XP_012091637.1
description PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
swissprot
ID Q9SA35
description Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=2
trembl
ID B9SAL9
description Cell division control protein, putative OS=Ricinus communis GN=RCOM_1104330 PE=4 SV=1
Gene Ontology
ID GO:0016020
description ala-interacting subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_020 0.0 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
2 Hb_156212_010 0.0007566873 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000340_170 0.0008416383 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
4 Hb_004918_020 0.0016625345 - - -
5 Hb_003018_220 0.001985112 - - Snakin-2 [Gossypium arboreum]
6 Hb_001491_080 0.0055916725 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000803_280 0.0064391778 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
8 Hb_131748_010 0.0066404684 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
9 Hb_000813_110 0.0121625624 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
10 Hb_000134_140 0.0148893597 - - lipid binding protein, putative [Ricinus communis]
11 Hb_004957_040 0.018217335 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
12 Hb_000397_180 0.0200534413 - - -
13 Hb_037000_010 0.0200576162 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
14 Hb_102179_020 0.0214029083 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
15 Hb_002007_030 0.0228143728 - - conserved hypothetical protein [Ricinus communis]
16 Hb_158909_010 0.0230478209 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_003251_020 0.0237685958 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
18 Hb_000107_690 0.0240009111 - - zinc finger protein, putative [Ricinus communis]
19 Hb_086639_110 0.0282432961 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
20 Hb_000330_010 0.0283962291 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]

Gene co-expression network

sample Hb_000002_020 Hb_000002_020 Hb_156212_010 Hb_156212_010 Hb_000002_020--Hb_156212_010 Hb_000340_170 Hb_000340_170 Hb_000002_020--Hb_000340_170 Hb_004918_020 Hb_004918_020 Hb_000002_020--Hb_004918_020 Hb_003018_220 Hb_003018_220 Hb_000002_020--Hb_003018_220 Hb_001491_080 Hb_001491_080 Hb_000002_020--Hb_001491_080 Hb_000803_280 Hb_000803_280 Hb_000002_020--Hb_000803_280 Hb_156212_010--Hb_000340_170 Hb_156212_010--Hb_004918_020 Hb_156212_010--Hb_003018_220 Hb_131748_010 Hb_131748_010 Hb_156212_010--Hb_131748_010 Hb_156212_010--Hb_001491_080 Hb_000340_170--Hb_004918_020 Hb_000340_170--Hb_003018_220 Hb_000340_170--Hb_131748_010 Hb_000340_170--Hb_001491_080 Hb_004918_020--Hb_003018_220 Hb_004918_020--Hb_001491_080 Hb_004918_020--Hb_000803_280 Hb_003018_220--Hb_001491_080 Hb_003018_220--Hb_000803_280 Hb_001491_080--Hb_000803_280 Hb_000813_110 Hb_000813_110 Hb_000803_280--Hb_000813_110 Hb_000803_280--Hb_156212_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.336329 1.62156 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis