Hb_000803_280

Information

Type -
Description -
Location Contig803: 320687-328805
Sequence    

Annotation

kegg
ID rcu:RCOM_1579200
description lipid binding protein, putative
nr
ID XP_012090067.1
description PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JE49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58917: 317442-319959
cDNA
(Sanger)
(ID:Location)		 002_D24.ab1: 317444-319754 , 002_M15.ab1: 317442-319895 , 003_C03.ab1: 317442-319733 , 003_H04.ab1: 317442-319780 , 005_M19.ab1: 317444-319959 , 022_C14.ab1: 317444-319692 , 022_J24.ab1: 317442-319841 , 024_N13.ab1: 317442-319841 , 027_J11.ab1: 317441-319769 , 032_O10.ab1: 317442-319803

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_280 0.0 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
2 Hb_001491_080 0.0008475326 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003018_220 0.0044541163 - - Snakin-2 [Gossypium arboreum]
4 Hb_004918_020 0.0047766886 - - -
5 Hb_000813_110 0.0057237894 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
6 Hb_000002_020 0.0064391778 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_156212_010 0.0071958343 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_000340_170 0.0072807814 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
9 Hb_131748_010 0.0130791591 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
10 Hb_000397_180 0.0136158761 - - -
11 Hb_102179_020 0.0149656273 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_002007_030 0.0163774137 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000134_140 0.0213267842 - - lipid binding protein, putative [Ricinus communis]
14 Hb_004957_040 0.0246540486 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
15 Hb_037000_010 0.0264938885 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
16 Hb_007227_020 0.0273450624 - - -
17 Hb_000679_180 0.0277639815 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_006663_120 0.0280609174 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001002_010 0.0292642807 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158909_010 0.0294833043 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_280 Hb_000803_280 Hb_001491_080 Hb_001491_080 Hb_000803_280--Hb_001491_080 Hb_003018_220 Hb_003018_220 Hb_000803_280--Hb_003018_220 Hb_004918_020 Hb_004918_020 Hb_000803_280--Hb_004918_020 Hb_000813_110 Hb_000813_110 Hb_000803_280--Hb_000813_110 Hb_000002_020 Hb_000002_020 Hb_000803_280--Hb_000002_020 Hb_156212_010 Hb_156212_010 Hb_000803_280--Hb_156212_010 Hb_001491_080--Hb_003018_220 Hb_001491_080--Hb_004918_020 Hb_001491_080--Hb_000002_020 Hb_001491_080--Hb_156212_010 Hb_000340_170 Hb_000340_170 Hb_001491_080--Hb_000340_170 Hb_003018_220--Hb_004918_020 Hb_003018_220--Hb_000002_020 Hb_003018_220--Hb_156212_010 Hb_003018_220--Hb_000340_170 Hb_004918_020--Hb_000002_020 Hb_004918_020--Hb_156212_010 Hb_004918_020--Hb_000340_170 Hb_000813_110--Hb_001491_080 Hb_000397_180 Hb_000397_180 Hb_000813_110--Hb_000397_180 Hb_102179_020 Hb_102179_020 Hb_000813_110--Hb_102179_020 Hb_000813_110--Hb_003018_220 Hb_000813_110--Hb_004918_020 Hb_000002_020--Hb_156212_010 Hb_000002_020--Hb_000340_170 Hb_156212_010--Hb_000340_170 Hb_131748_010 Hb_131748_010 Hb_156212_010--Hb_131748_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.22805 6.16539 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis