Hb_000397_180

Information

Type -
Description -
Location Contig397: 325177-325874
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000397_180 0.0 - - -
2 Hb_102179_020 0.0013500145 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
3 Hb_002007_030 0.0027621288 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000813_110 0.0078926646 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
5 Hb_000803_280 0.0136158761 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
6 Hb_007227_020 0.0137342039 - - -
7 Hb_000679_180 0.0141533597 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_006663_120 0.0144504666 - - ATP binding protein, putative [Ricinus communis]
9 Hb_001491_080 0.0144632539 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001002_010 0.015654549 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003018_220 0.0180689833 - - Snakin-2 [Gossypium arboreum]
12 Hb_004918_020 0.0183914639 - - -
13 Hb_000002_020 0.0200534413 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
14 Hb_002217_010 0.0205750933 - - Peroxiredoxin, putative [Ricinus communis]
15 Hb_156212_010 0.020809843 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
16 Hb_000340_170 0.0208947607 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
17 Hb_000471_130 0.0214689711 - - conserved hypothetical protein [Ricinus communis]
18 Hb_090521_010 0.0239460956 - - Major allergen Pru ar, putative [Ricinus communis]
19 Hb_036116_010 0.0256557413 - - JHL22C18.10 [Jatropha curcas]
20 Hb_131748_010 0.0266907319 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]

Gene co-expression network

sample Hb_000397_180 Hb_000397_180 Hb_102179_020 Hb_102179_020 Hb_000397_180--Hb_102179_020 Hb_002007_030 Hb_002007_030 Hb_000397_180--Hb_002007_030 Hb_000813_110 Hb_000813_110 Hb_000397_180--Hb_000813_110 Hb_000803_280 Hb_000803_280 Hb_000397_180--Hb_000803_280 Hb_007227_020 Hb_007227_020 Hb_000397_180--Hb_007227_020 Hb_000679_180 Hb_000679_180 Hb_000397_180--Hb_000679_180 Hb_102179_020--Hb_002007_030 Hb_102179_020--Hb_000813_110 Hb_102179_020--Hb_007227_020 Hb_102179_020--Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_102179_020--Hb_006663_120 Hb_002007_030--Hb_000813_110 Hb_002007_030--Hb_007227_020 Hb_002007_030--Hb_000679_180 Hb_002007_030--Hb_006663_120 Hb_000813_110--Hb_000803_280 Hb_001491_080 Hb_001491_080 Hb_000813_110--Hb_001491_080 Hb_003018_220 Hb_003018_220 Hb_000813_110--Hb_003018_220 Hb_004918_020 Hb_004918_020 Hb_000813_110--Hb_004918_020 Hb_000803_280--Hb_001491_080 Hb_000803_280--Hb_003018_220 Hb_000803_280--Hb_004918_020 Hb_000002_020 Hb_000002_020 Hb_000803_280--Hb_000002_020 Hb_156212_010 Hb_156212_010 Hb_000803_280--Hb_156212_010 Hb_007227_020--Hb_000679_180 Hb_007227_020--Hb_006663_120 Hb_001002_010 Hb_001002_010 Hb_007227_020--Hb_001002_010 Hb_002217_010 Hb_002217_010 Hb_007227_020--Hb_002217_010 Hb_000471_130 Hb_000471_130 Hb_007227_020--Hb_000471_130 Hb_090521_010 Hb_090521_010 Hb_007227_020--Hb_090521_010 Hb_000679_180--Hb_006663_120 Hb_000679_180--Hb_001002_010 Hb_000679_180--Hb_002217_010 Hb_000679_180--Hb_000471_130 Hb_000679_180--Hb_090521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.033869 0.185575 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis