Hb_002217_010

Information

Type -
Description -
Location Contig2217: 6256-7444
Sequence    

Annotation

kegg
ID rcu:RCOM_1002870
description Peroxiredoxin, putative (EC:1.11.1.7)
nr
ID XP_002519297.1
description Peroxiredoxin, putative [Ricinus communis]
swissprot
ID Q6E2Z6
description 1-Cys peroxiredoxin OS=Medicago truncatula PE=2 SV=1
trembl
ID B9RZX8
description Peroxiredoxin, putative OS=Ricinus communis GN=RCOM_1002870 PE=4 SV=1
Gene Ontology
ID GO:0051920
description 1-cys peroxiredoxin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_010 0.0 - - Peroxiredoxin, putative [Ricinus communis]
2 Hb_000471_130 0.0008943007 - - conserved hypothetical protein [Ricinus communis]
3 Hb_090521_010 0.0033727907 - - Major allergen Pru ar, putative [Ricinus communis]
4 Hb_001002_010 0.0049222208 - - conserved hypothetical protein [Ricinus communis]
5 Hb_036116_010 0.0050835465 - - JHL22C18.10 [Jatropha curcas]
6 Hb_006663_120 0.0061265481 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000679_180 0.0064237054 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
8 Hb_007227_020 0.006842926 - - -
9 Hb_002157_110 0.0104495397 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_004899_240 0.0135190083 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005333_090 0.0168136889 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_003038_020 0.0175718535 - - unnamed protein product [Coffea canephora]
13 Hb_002007_030 0.0178140065 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003687_060 0.0182980694 - - conserved hypothetical protein [Ricinus communis]
15 Hb_102179_020 0.0192256268 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_000397_180 0.0205750933 - - -
17 Hb_005356_020 0.0220043829 - - glutaredoxin, grx, putative [Ricinus communis]
18 Hb_001552_010 0.0227333232 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010128_140 0.026202577 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
20 Hb_000813_110 0.0284631045 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_002217_010 Hb_002217_010 Hb_000471_130 Hb_000471_130 Hb_002217_010--Hb_000471_130 Hb_090521_010 Hb_090521_010 Hb_002217_010--Hb_090521_010 Hb_001002_010 Hb_001002_010 Hb_002217_010--Hb_001002_010 Hb_036116_010 Hb_036116_010 Hb_002217_010--Hb_036116_010 Hb_006663_120 Hb_006663_120 Hb_002217_010--Hb_006663_120 Hb_000679_180 Hb_000679_180 Hb_002217_010--Hb_000679_180 Hb_000471_130--Hb_090521_010 Hb_000471_130--Hb_036116_010 Hb_000471_130--Hb_001002_010 Hb_000471_130--Hb_006663_120 Hb_000471_130--Hb_000679_180 Hb_090521_010--Hb_036116_010 Hb_002157_110 Hb_002157_110 Hb_090521_010--Hb_002157_110 Hb_090521_010--Hb_001002_010 Hb_090521_010--Hb_006663_120 Hb_001002_010--Hb_006663_120 Hb_001002_010--Hb_000679_180 Hb_007227_020 Hb_007227_020 Hb_001002_010--Hb_007227_020 Hb_036116_010--Hb_002157_110 Hb_004899_240 Hb_004899_240 Hb_036116_010--Hb_004899_240 Hb_036116_010--Hb_001002_010 Hb_006663_120--Hb_000679_180 Hb_006663_120--Hb_007227_020 Hb_000679_180--Hb_007227_020 Hb_000679_180--Hb_090521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0332076 0.208749 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis