Hb_002007_030

Information

Type -
Description -
Location Contig2007: 17722-18081
Sequence    

Annotation

kegg
ID rcu:RCOM_1433080
description hypothetical protein
nr
ID XP_002512418.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RF99
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433080 PE=4 SV=1
Gene Ontology
ID GO:0003676
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_102179_020 0.0014121195 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
3 Hb_000397_180 0.0027621288 - - -
4 Hb_000813_110 0.0106545679 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
5 Hb_007227_020 0.0109724975 - - -
6 Hb_000679_180 0.0113916832 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_006663_120 0.0116888119 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001002_010 0.0128929881 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000803_280 0.0163774137 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
10 Hb_001491_080 0.0172247234 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002217_010 0.0178140065 - - Peroxiredoxin, putative [Ricinus communis]
12 Hb_000471_130 0.0187079862 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003018_220 0.0208301232 - - Snakin-2 [Gossypium arboreum]
14 Hb_004918_020 0.0211525713 - - -
15 Hb_090521_010 0.0211854192 - - Major allergen Pru ar, putative [Ricinus communis]
16 Hb_000002_020 0.0228143728 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
17 Hb_036116_010 0.0228953001 - - JHL22C18.10 [Jatropha curcas]
18 Hb_156212_010 0.0235706902 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000340_170 0.0236555982 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
20 Hb_002157_110 0.0282577649 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_030 Hb_002007_030 Hb_102179_020 Hb_102179_020 Hb_002007_030--Hb_102179_020 Hb_000397_180 Hb_000397_180 Hb_002007_030--Hb_000397_180 Hb_000813_110 Hb_000813_110 Hb_002007_030--Hb_000813_110 Hb_007227_020 Hb_007227_020 Hb_002007_030--Hb_007227_020 Hb_000679_180 Hb_000679_180 Hb_002007_030--Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_002007_030--Hb_006663_120 Hb_102179_020--Hb_000397_180 Hb_102179_020--Hb_000813_110 Hb_102179_020--Hb_007227_020 Hb_102179_020--Hb_000679_180 Hb_102179_020--Hb_006663_120 Hb_000397_180--Hb_000813_110 Hb_000803_280 Hb_000803_280 Hb_000397_180--Hb_000803_280 Hb_000397_180--Hb_007227_020 Hb_000397_180--Hb_000679_180 Hb_000813_110--Hb_000803_280 Hb_001491_080 Hb_001491_080 Hb_000813_110--Hb_001491_080 Hb_003018_220 Hb_003018_220 Hb_000813_110--Hb_003018_220 Hb_004918_020 Hb_004918_020 Hb_000813_110--Hb_004918_020 Hb_007227_020--Hb_000679_180 Hb_007227_020--Hb_006663_120 Hb_001002_010 Hb_001002_010 Hb_007227_020--Hb_001002_010 Hb_002217_010 Hb_002217_010 Hb_007227_020--Hb_002217_010 Hb_000471_130 Hb_000471_130 Hb_007227_020--Hb_000471_130 Hb_090521_010 Hb_090521_010 Hb_007227_020--Hb_090521_010 Hb_000679_180--Hb_006663_120 Hb_000679_180--Hb_001002_010 Hb_000679_180--Hb_002217_010 Hb_000679_180--Hb_000471_130 Hb_000679_180--Hb_090521_010 Hb_006663_120--Hb_001002_010 Hb_006663_120--Hb_002217_010 Hb_006663_120--Hb_000471_130 Hb_006663_120--Hb_090521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.165014 0.920622 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis