Hb_003018_220

Information

Type -
Description -
Location Contig3018: 105644-106157
Sequence    

Annotation

kegg
ID tcc:TCM_000210
description hypothetical protein
nr
ID KHG05805.1
description Snakin-2 [Gossypium arboreum]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID A0A0B0MYK1
description Snakin-2 OS=Gossypium arboreum GN=F383_32973 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_220 0.0 - - Snakin-2 [Gossypium arboreum]
2 Hb_004918_020 0.0003225784 - - -
3 Hb_000002_020 0.001985112 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_156212_010 0.0027417957 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_000340_170 0.0028267462 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
6 Hb_001491_080 0.0036065959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000803_280 0.0044541163 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
8 Hb_131748_010 0.0086254822 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
9 Hb_000813_110 0.0101776704 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
10 Hb_000134_140 0.0168740476 - - lipid binding protein, putative [Ricinus communis]
11 Hb_000397_180 0.0180689833 - - -
12 Hb_102179_020 0.0194185485 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
13 Hb_004957_040 0.0202018297 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
14 Hb_002007_030 0.0208301232 - - conserved hypothetical protein [Ricinus communis]
15 Hb_037000_010 0.0220419891 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
16 Hb_158909_010 0.0250319739 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_003251_020 0.0257526917 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
18 Hb_000107_690 0.0259849883 - - zinc finger protein, putative [Ricinus communis]
19 Hb_086639_110 0.0302270028 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
20 Hb_000330_010 0.0303799214 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]

Gene co-expression network

sample Hb_003018_220 Hb_003018_220 Hb_004918_020 Hb_004918_020 Hb_003018_220--Hb_004918_020 Hb_000002_020 Hb_000002_020 Hb_003018_220--Hb_000002_020 Hb_156212_010 Hb_156212_010 Hb_003018_220--Hb_156212_010 Hb_000340_170 Hb_000340_170 Hb_003018_220--Hb_000340_170 Hb_001491_080 Hb_001491_080 Hb_003018_220--Hb_001491_080 Hb_000803_280 Hb_000803_280 Hb_003018_220--Hb_000803_280 Hb_004918_020--Hb_000002_020 Hb_004918_020--Hb_156212_010 Hb_004918_020--Hb_000340_170 Hb_004918_020--Hb_001491_080 Hb_004918_020--Hb_000803_280 Hb_000002_020--Hb_156212_010 Hb_000002_020--Hb_000340_170 Hb_000002_020--Hb_001491_080 Hb_000002_020--Hb_000803_280 Hb_156212_010--Hb_000340_170 Hb_131748_010 Hb_131748_010 Hb_156212_010--Hb_131748_010 Hb_156212_010--Hb_001491_080 Hb_000340_170--Hb_131748_010 Hb_000340_170--Hb_001491_080 Hb_001491_080--Hb_000803_280 Hb_000813_110 Hb_000813_110 Hb_000803_280--Hb_000813_110 Hb_000803_280--Hb_156212_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.455988 2.22595 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis