Hb_000340_170

Information

Type -
Description -
Location Contig340: 174068-175538
Sequence    

Annotation

kegg
ID rcu:RCOM_0648160
description Alpha-L-fucosidase 2 precursor, putative
nr
ID XP_012092298.1
description PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
swissprot
ID Q3ECP6
description GDSL esterase/lipase At1g54790 OS=Arabidopsis thaliana GN=At1g54790 PE=2 SV=1
trembl
ID A0A067JCD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21977 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g54790-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_170 0.0 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
2 Hb_156212_010 8.49511e-05 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000002_020 0.0008416383 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_004918_020 0.0025041698 - - -
5 Hb_003018_220 0.0028267462 - - Snakin-2 [Gossypium arboreum]
6 Hb_131748_010 0.0057988579 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
7 Hb_001491_080 0.0064332842 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000803_280 0.0072807814 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
9 Hb_000813_110 0.0130040822 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
10 Hb_000134_140 0.0140478702 - - lipid binding protein, putative [Ricinus communis]
11 Hb_004957_040 0.0173759206 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
12 Hb_037000_010 0.0192162496 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
13 Hb_000397_180 0.0208947607 - - -
14 Hb_158909_010 0.0222065414 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_102179_020 0.0222441834 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_003251_020 0.022927339 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
17 Hb_000107_690 0.0231596618 - - zinc finger protein, putative [Ricinus communis]
18 Hb_002007_030 0.0236555982 - - conserved hypothetical protein [Ricinus communis]
19 Hb_086639_110 0.0274021951 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
20 Hb_000330_010 0.0275551338 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]

Gene co-expression network

sample Hb_000340_170 Hb_000340_170 Hb_156212_010 Hb_156212_010 Hb_000340_170--Hb_156212_010 Hb_000002_020 Hb_000002_020 Hb_000340_170--Hb_000002_020 Hb_004918_020 Hb_004918_020 Hb_000340_170--Hb_004918_020 Hb_003018_220 Hb_003018_220 Hb_000340_170--Hb_003018_220 Hb_131748_010 Hb_131748_010 Hb_000340_170--Hb_131748_010 Hb_001491_080 Hb_001491_080 Hb_000340_170--Hb_001491_080 Hb_156212_010--Hb_000002_020 Hb_156212_010--Hb_004918_020 Hb_156212_010--Hb_003018_220 Hb_156212_010--Hb_131748_010 Hb_156212_010--Hb_001491_080 Hb_000002_020--Hb_004918_020 Hb_000002_020--Hb_003018_220 Hb_000002_020--Hb_001491_080 Hb_000803_280 Hb_000803_280 Hb_000002_020--Hb_000803_280 Hb_004918_020--Hb_003018_220 Hb_004918_020--Hb_001491_080 Hb_004918_020--Hb_000803_280 Hb_003018_220--Hb_001491_080 Hb_003018_220--Hb_000803_280 Hb_131748_010--Hb_000002_020 Hb_000134_140 Hb_000134_140 Hb_131748_010--Hb_000134_140 Hb_131748_010--Hb_004918_020 Hb_131748_010--Hb_003018_220 Hb_001491_080--Hb_000803_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.089816 0.430767 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis