Hb_000813_110

Information

Type -
Description -
Location Contig813: 86087-86572
Sequence    

Annotation

kegg
ID bvg:104884346
description uncharacterized LOC104884346
nr
ID XP_010667291.1
description PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCF7
description Uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59295: 86426-86534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_110 0.0 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
2 Hb_000803_280 0.0057237894 - - PREDICTED: uncharacterized protein LOC105648326 [Jatropha curcas]
3 Hb_001491_080 0.0065712929 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000397_180 0.0078926646 - - -
5 Hb_102179_020 0.0092425837 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
6 Hb_003018_220 0.0101776704 - - Snakin-2 [Gossypium arboreum]
7 Hb_004918_020 0.0105002179 - - -
8 Hb_002007_030 0.0106545679 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000002_020 0.0121625624 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
10 Hb_156212_010 0.0129191438 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
11 Hb_000340_170 0.0130040822 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
12 Hb_131748_010 0.0188016936 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
13 Hb_007227_020 0.0216245413 - - -
14 Hb_000679_180 0.0220435776 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_006663_120 0.0223405979 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001002_010 0.0235443142 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000134_140 0.0270476763 - - lipid binding protein, putative [Ricinus communis]
18 Hb_002217_010 0.0284631045 - - Peroxiredoxin, putative [Ricinus communis]
19 Hb_000471_130 0.0293566186 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004957_040 0.0303741007 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000813_110 Hb_000813_110 Hb_000803_280 Hb_000803_280 Hb_000813_110--Hb_000803_280 Hb_001491_080 Hb_001491_080 Hb_000813_110--Hb_001491_080 Hb_000397_180 Hb_000397_180 Hb_000813_110--Hb_000397_180 Hb_102179_020 Hb_102179_020 Hb_000813_110--Hb_102179_020 Hb_003018_220 Hb_003018_220 Hb_000813_110--Hb_003018_220 Hb_004918_020 Hb_004918_020 Hb_000813_110--Hb_004918_020 Hb_000803_280--Hb_001491_080 Hb_000803_280--Hb_003018_220 Hb_000803_280--Hb_004918_020 Hb_000002_020 Hb_000002_020 Hb_000803_280--Hb_000002_020 Hb_156212_010 Hb_156212_010 Hb_000803_280--Hb_156212_010 Hb_001491_080--Hb_003018_220 Hb_001491_080--Hb_004918_020 Hb_001491_080--Hb_000002_020 Hb_001491_080--Hb_156212_010 Hb_000340_170 Hb_000340_170 Hb_001491_080--Hb_000340_170 Hb_000397_180--Hb_102179_020 Hb_002007_030 Hb_002007_030 Hb_000397_180--Hb_002007_030 Hb_000397_180--Hb_000803_280 Hb_007227_020 Hb_007227_020 Hb_000397_180--Hb_007227_020 Hb_000679_180 Hb_000679_180 Hb_000397_180--Hb_000679_180 Hb_102179_020--Hb_002007_030 Hb_102179_020--Hb_007227_020 Hb_102179_020--Hb_000679_180 Hb_006663_120 Hb_006663_120 Hb_102179_020--Hb_006663_120 Hb_003018_220--Hb_004918_020 Hb_003018_220--Hb_000002_020 Hb_003018_220--Hb_156212_010 Hb_003018_220--Hb_000340_170 Hb_004918_020--Hb_000002_020 Hb_004918_020--Hb_156212_010 Hb_004918_020--Hb_000340_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.197817 1.02999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis