Hb_158909_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig158909: 2-469
Sequence    

Annotation

kegg
ID rcu:RCOM_0496700
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012066789.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067LDA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00277 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158909_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_003251_020 0.0007210903 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
3 Hb_000107_690 0.0009535112 - - zinc finger protein, putative [Ricinus communis]
4 Hb_037000_010 0.0029913165 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
5 Hb_004957_040 0.0048321226 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
6 Hb_086639_110 0.0051981553 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
7 Hb_000330_010 0.0053511813 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
8 Hb_000134_140 0.0081607342 - - lipid binding protein, putative [Ricinus communis]
9 Hb_000130_430 0.0103069903 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_001136_150 0.0110303778 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001248_160 0.0146555705 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
12 Hb_131748_010 0.0164094221 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
13 Hb_163180_010 0.0185780458 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_001926_060 0.01968148 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
15 Hb_007058_020 0.0206603699 - - -
16 Hb_000340_170 0.0222065414 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
17 Hb_156212_010 0.0222914575 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
18 Hb_000002_020 0.0230478209 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_004918_020 0.0247095631 - - -
20 Hb_003018_220 0.0250319739 - - Snakin-2 [Gossypium arboreum]

Gene co-expression network

sample Hb_158909_010 Hb_158909_010 Hb_003251_020 Hb_003251_020 Hb_158909_010--Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_158909_010--Hb_000107_690 Hb_037000_010 Hb_037000_010 Hb_158909_010--Hb_037000_010 Hb_004957_040 Hb_004957_040 Hb_158909_010--Hb_004957_040 Hb_086639_110 Hb_086639_110 Hb_158909_010--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_158909_010--Hb_000330_010 Hb_003251_020--Hb_000107_690 Hb_003251_020--Hb_037000_010 Hb_003251_020--Hb_086639_110 Hb_003251_020--Hb_000330_010 Hb_003251_020--Hb_004957_040 Hb_000107_690--Hb_037000_010 Hb_000107_690--Hb_086639_110 Hb_000107_690--Hb_000330_010 Hb_000107_690--Hb_004957_040 Hb_037000_010--Hb_004957_040 Hb_000134_140 Hb_000134_140 Hb_037000_010--Hb_000134_140 Hb_037000_010--Hb_086639_110 Hb_004957_040--Hb_000134_140 Hb_004957_040--Hb_086639_110 Hb_086639_110--Hb_000330_010 Hb_000130_430 Hb_000130_430 Hb_086639_110--Hb_000130_430 Hb_001136_150 Hb_001136_150 Hb_086639_110--Hb_001136_150 Hb_000330_010--Hb_000130_430 Hb_000330_010--Hb_001136_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.102191 0.42804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis