Hb_001136_150

Information

Type -
Description -
Location Contig1136: 136199-137164
Sequence    

Annotation

kegg
ID rcu:RCOM_0353580
description hypothetical protein
nr
ID XP_002529141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LQU4
description Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1
trembl
ID B9ST22
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0353580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000130_430 0.0007234483 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
3 Hb_001248_160 0.0036256226 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
4 Hb_000330_010 0.0056794464 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
5 Hb_086639_110 0.0058324718 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
6 Hb_163180_010 0.0075487949 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_001926_060 0.008652468 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
8 Hb_007058_020 0.0096315854 - - -
9 Hb_000107_690 0.0100769462 - - zinc finger protein, putative [Ricinus communis]
10 Hb_003251_020 0.0103093491 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
11 Hb_158909_010 0.0110303778 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_037000_010 0.0140213444 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
13 Hb_004957_040 0.0158618588 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
14 Hb_176760_010 0.0168574566 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
15 Hb_000134_140 0.0191897935 - - lipid binding protein, putative [Ricinus communis]
16 Hb_008895_010 0.0252132762 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004324_180 0.0265551875 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_131748_010 0.0274359536 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
19 Hb_039046_010 0.0317708943 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
20 Hb_000340_170 0.0332305493 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]

Gene co-expression network

sample Hb_001136_150 Hb_001136_150 Hb_000130_430 Hb_000130_430 Hb_001136_150--Hb_000130_430 Hb_001248_160 Hb_001248_160 Hb_001136_150--Hb_001248_160 Hb_000330_010 Hb_000330_010 Hb_001136_150--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_001136_150--Hb_086639_110 Hb_163180_010 Hb_163180_010 Hb_001136_150--Hb_163180_010 Hb_001926_060 Hb_001926_060 Hb_001136_150--Hb_001926_060 Hb_000130_430--Hb_001248_160 Hb_000130_430--Hb_000330_010 Hb_000130_430--Hb_086639_110 Hb_000130_430--Hb_163180_010 Hb_000107_690 Hb_000107_690 Hb_000130_430--Hb_000107_690 Hb_001248_160--Hb_163180_010 Hb_001248_160--Hb_001926_060 Hb_007058_020 Hb_007058_020 Hb_001248_160--Hb_007058_020 Hb_001248_160--Hb_000330_010 Hb_000330_010--Hb_086639_110 Hb_000330_010--Hb_000107_690 Hb_003251_020 Hb_003251_020 Hb_000330_010--Hb_003251_020 Hb_158909_010 Hb_158909_010 Hb_000330_010--Hb_158909_010 Hb_086639_110--Hb_000107_690 Hb_086639_110--Hb_003251_020 Hb_086639_110--Hb_158909_010 Hb_163180_010--Hb_001926_060 Hb_163180_010--Hb_007058_020 Hb_176760_010 Hb_176760_010 Hb_163180_010--Hb_176760_010 Hb_001926_060--Hb_007058_020 Hb_001926_060--Hb_176760_010 Hb_001926_060--Hb_000130_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0556624 0.218432 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis