Hb_176760_010

Information

Type -
Description -
Location Contig176760: 175-879
Sequence    

Annotation

kegg
ID mtr:MTR_6g026690
description hypothetical protein
nr
ID XP_012080862.1
description PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176760_010 0.0 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
2 Hb_007058_020 0.0072266837 - - -
3 Hb_001926_060 0.0082058187 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
4 Hb_008895_010 0.0083582171 - - conserved hypothetical protein [Ricinus communis]
5 Hb_163180_010 0.0093094849 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_004324_180 0.0097006552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_001248_160 0.0132323996 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
8 Hb_039046_010 0.0149187727 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
9 Hb_009615_140 0.0165649809 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
10 Hb_001136_150 0.0168574566 - - conserved hypothetical protein [Ricinus communis]
11 Hb_126871_010 0.0168788824 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
12 Hb_000172_040 0.0173045361 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
13 Hb_000130_430 0.0175807538 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
14 Hb_006111_050 0.01938499 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
15 Hb_000330_010 0.02253537 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
16 Hb_086639_110 0.0226883431 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
17 Hb_004881_090 0.0236572361 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
18 Hb_000834_120 0.0261373914 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
19 Hb_000107_690 0.0269311281 - - zinc finger protein, putative [Ricinus communis]
20 Hb_003251_020 0.0271634253 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]

Gene co-expression network

sample Hb_176760_010 Hb_176760_010 Hb_007058_020 Hb_007058_020 Hb_176760_010--Hb_007058_020 Hb_001926_060 Hb_001926_060 Hb_176760_010--Hb_001926_060 Hb_008895_010 Hb_008895_010 Hb_176760_010--Hb_008895_010 Hb_163180_010 Hb_163180_010 Hb_176760_010--Hb_163180_010 Hb_004324_180 Hb_004324_180 Hb_176760_010--Hb_004324_180 Hb_001248_160 Hb_001248_160 Hb_176760_010--Hb_001248_160 Hb_007058_020--Hb_001926_060 Hb_007058_020--Hb_163180_010 Hb_007058_020--Hb_001248_160 Hb_001136_150 Hb_001136_150 Hb_007058_020--Hb_001136_150 Hb_000130_430 Hb_000130_430 Hb_007058_020--Hb_000130_430 Hb_001926_060--Hb_163180_010 Hb_001926_060--Hb_001248_160 Hb_001926_060--Hb_001136_150 Hb_001926_060--Hb_000130_430 Hb_008895_010--Hb_004324_180 Hb_039046_010 Hb_039046_010 Hb_008895_010--Hb_039046_010 Hb_009615_140 Hb_009615_140 Hb_008895_010--Hb_009615_140 Hb_126871_010 Hb_126871_010 Hb_008895_010--Hb_126871_010 Hb_000172_040 Hb_000172_040 Hb_008895_010--Hb_000172_040 Hb_163180_010--Hb_001248_160 Hb_163180_010--Hb_001136_150 Hb_163180_010--Hb_000130_430 Hb_004324_180--Hb_039046_010 Hb_004324_180--Hb_009615_140 Hb_004324_180--Hb_126871_010 Hb_004324_180--Hb_000172_040 Hb_006111_050 Hb_006111_050 Hb_004324_180--Hb_006111_050 Hb_001248_160--Hb_001136_150 Hb_001248_160--Hb_000130_430 Hb_000330_010 Hb_000330_010 Hb_001248_160--Hb_000330_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0278391 0.0991191 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis