Hb_163180_010

Information

Type -
Description -
Location Contig163180: 2812-4036
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_163180_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_001926_060 0.0011037239 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
3 Hb_007058_020 0.002082897 - - -
4 Hb_001248_160 0.0039232486 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_001136_150 0.0075487949 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000130_430 0.0082722109 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
7 Hb_176760_010 0.0093094849 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
8 Hb_000330_010 0.0132278319 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
9 Hb_086639_110 0.0133808414 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
10 Hb_000107_690 0.017624766 - - zinc finger protein, putative [Ricinus communis]
11 Hb_008895_010 0.0176667856 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003251_020 0.0178571329 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
13 Hb_158909_010 0.0185780458 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_004324_180 0.0190089981 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_037000_010 0.0215684677 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
16 Hb_004957_040 0.0234085948 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
17 Hb_039046_010 0.0242260382 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
18 Hb_009615_140 0.0258718411 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
19 Hb_126871_010 0.0261856618 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
20 Hb_000172_040 0.0266112041 - - Tetratricopeptide repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_163180_010 Hb_163180_010 Hb_001926_060 Hb_001926_060 Hb_163180_010--Hb_001926_060 Hb_007058_020 Hb_007058_020 Hb_163180_010--Hb_007058_020 Hb_001248_160 Hb_001248_160 Hb_163180_010--Hb_001248_160 Hb_001136_150 Hb_001136_150 Hb_163180_010--Hb_001136_150 Hb_000130_430 Hb_000130_430 Hb_163180_010--Hb_000130_430 Hb_176760_010 Hb_176760_010 Hb_163180_010--Hb_176760_010 Hb_001926_060--Hb_007058_020 Hb_001926_060--Hb_001248_160 Hb_001926_060--Hb_176760_010 Hb_001926_060--Hb_001136_150 Hb_001926_060--Hb_000130_430 Hb_007058_020--Hb_001248_160 Hb_007058_020--Hb_176760_010 Hb_007058_020--Hb_001136_150 Hb_007058_020--Hb_000130_430 Hb_001248_160--Hb_001136_150 Hb_001248_160--Hb_000130_430 Hb_000330_010 Hb_000330_010 Hb_001248_160--Hb_000330_010 Hb_001136_150--Hb_000130_430 Hb_001136_150--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_001136_150--Hb_086639_110 Hb_000130_430--Hb_000330_010 Hb_000130_430--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_000130_430--Hb_000107_690 Hb_008895_010 Hb_008895_010 Hb_176760_010--Hb_008895_010 Hb_004324_180 Hb_004324_180 Hb_176760_010--Hb_004324_180 Hb_176760_010--Hb_001248_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0257768 0.0968092 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis