Hb_126871_010

Information

Type -
Description -
Location Contig126871: 1020-1349
Sequence    

Annotation

kegg
ID rcu:RCOM_0820180
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012082586.1
description PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
swissprot
ID Q94CL8
description Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1
trembl
ID A0A067K1V4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16437 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126871_010 0.0 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
2 Hb_009615_140 0.0003139569 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
3 Hb_000172_040 0.0004257321 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
4 Hb_039046_010 0.0019604221 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
5 Hb_006111_050 0.002506623 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
6 Hb_004881_090 0.0067800438 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
7 Hb_004324_180 0.0071789772 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_008895_010 0.0085214339 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000834_120 0.0092610497 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
10 Hb_000373_090 0.0106463763 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
11 Hb_003486_040 0.010986465 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
12 Hb_000049_320 0.011931721 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
13 Hb_008686_050 0.016738829 - - -
14 Hb_176760_010 0.0168788824 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
15 Hb_007058_020 0.0241036393 - - -
16 Hb_001926_060 0.0250824209 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
17 Hb_163180_010 0.0261856618 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_003914_040 0.0288332852 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
19 Hb_007040_020 0.0288408392 - - -
20 Hb_000295_150 0.0296419961 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_126871_010 Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_126871_010--Hb_009615_140 Hb_000172_040 Hb_000172_040 Hb_126871_010--Hb_000172_040 Hb_039046_010 Hb_039046_010 Hb_126871_010--Hb_039046_010 Hb_006111_050 Hb_006111_050 Hb_126871_010--Hb_006111_050 Hb_004881_090 Hb_004881_090 Hb_126871_010--Hb_004881_090 Hb_004324_180 Hb_004324_180 Hb_126871_010--Hb_004324_180 Hb_009615_140--Hb_000172_040 Hb_009615_140--Hb_039046_010 Hb_009615_140--Hb_006111_050 Hb_009615_140--Hb_004324_180 Hb_009615_140--Hb_004881_090 Hb_000172_040--Hb_006111_050 Hb_000172_040--Hb_039046_010 Hb_000172_040--Hb_004881_090 Hb_000172_040--Hb_004324_180 Hb_039046_010--Hb_006111_050 Hb_039046_010--Hb_004324_180 Hb_008895_010 Hb_008895_010 Hb_039046_010--Hb_008895_010 Hb_006111_050--Hb_004881_090 Hb_000834_120 Hb_000834_120 Hb_006111_050--Hb_000834_120 Hb_004881_090--Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_004881_090--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_004881_090--Hb_003486_040 Hb_000049_320 Hb_000049_320 Hb_004881_090--Hb_000049_320 Hb_004324_180--Hb_008895_010 Hb_004324_180--Hb_006111_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.110608 0.358186 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis