Hb_003486_040

Information

Type -
Description -
Location Contig3486: 23945-25459
Sequence    

Annotation

kegg
ID mtr:MTR_6g081210
description hypothetical protein
nr
ID XP_012065777.1
description PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003486_040 0.0 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
2 Hb_000373_090 0.0003401124 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
3 Hb_000049_320 0.0009453296 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
4 Hb_000834_120 0.00172552 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
5 Hb_004881_090 0.0042066088 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
6 Hb_008686_050 0.0057529878 - - -
7 Hb_006111_050 0.0084799827 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
8 Hb_000172_040 0.0105607628 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
9 Hb_126871_010 0.010986465 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_009615_140 0.0113003983 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
11 Hb_039046_010 0.0129467181 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
12 Hb_003914_040 0.0178500954 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
13 Hb_007040_020 0.0178576516 - - -
14 Hb_004324_180 0.0181645667 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000295_150 0.0186590466 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_008895_010 0.0195067807 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000125_050 0.0231786297 - - -
18 Hb_000494_140 0.0247365133 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
19 Hb_000039_130 0.0268525682 - - -
20 Hb_176760_010 0.027862143 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]

Gene co-expression network

sample Hb_003486_040 Hb_003486_040 Hb_000373_090 Hb_000373_090 Hb_003486_040--Hb_000373_090 Hb_000049_320 Hb_000049_320 Hb_003486_040--Hb_000049_320 Hb_000834_120 Hb_000834_120 Hb_003486_040--Hb_000834_120 Hb_004881_090 Hb_004881_090 Hb_003486_040--Hb_004881_090 Hb_008686_050 Hb_008686_050 Hb_003486_040--Hb_008686_050 Hb_006111_050 Hb_006111_050 Hb_003486_040--Hb_006111_050 Hb_000373_090--Hb_000049_320 Hb_000373_090--Hb_000834_120 Hb_000373_090--Hb_004881_090 Hb_000373_090--Hb_008686_050 Hb_000373_090--Hb_006111_050 Hb_000049_320--Hb_000834_120 Hb_000049_320--Hb_008686_050 Hb_000049_320--Hb_004881_090 Hb_000049_320--Hb_006111_050 Hb_000834_120--Hb_004881_090 Hb_000834_120--Hb_006111_050 Hb_000834_120--Hb_008686_050 Hb_004881_090--Hb_006111_050 Hb_000172_040 Hb_000172_040 Hb_004881_090--Hb_000172_040 Hb_008686_050--Hb_004881_090 Hb_003914_040 Hb_003914_040 Hb_008686_050--Hb_003914_040 Hb_006111_050--Hb_000172_040 Hb_126871_010 Hb_126871_010 Hb_006111_050--Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_006111_050--Hb_009615_140 Hb_039046_010 Hb_039046_010 Hb_006111_050--Hb_039046_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0207376 0.0632157 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis