Hb_004957_040

Information

Type -
Description -
Location Contig4957: 23773-24493
Sequence    

Annotation

kegg
ID bvg:104890338
description uncharacterized LOC104890338
nr
ID XP_010674085.1
description PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCK1
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45455: 23779-24024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004957_040 0.0 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
2 Hb_037000_010 0.0018408267 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
3 Hb_000134_140 0.0033287147 - - lipid binding protein, putative [Ricinus communis]
4 Hb_158909_010 0.0048321226 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_003251_020 0.005553198 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
6 Hb_000107_690 0.0057856132 - - zinc finger protein, putative [Ricinus communis]
7 Hb_086639_110 0.0100300847 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
8 Hb_000330_010 0.0101831021 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
9 Hb_131748_010 0.0115780312 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
10 Hb_000130_430 0.01513854 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
11 Hb_001136_150 0.0158618588 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000340_170 0.0173759206 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
13 Hb_156212_010 0.0174608501 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_000002_020 0.018217335 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
15 Hb_001248_160 0.0194866526 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
16 Hb_004918_020 0.0198793611 - - -
17 Hb_003018_220 0.0202018297 - - Snakin-2 [Gossypium arboreum]
18 Hb_163180_010 0.0234085948 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_001491_080 0.0238069444 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001926_060 0.0245118604 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004957_040 Hb_004957_040 Hb_037000_010 Hb_037000_010 Hb_004957_040--Hb_037000_010 Hb_000134_140 Hb_000134_140 Hb_004957_040--Hb_000134_140 Hb_158909_010 Hb_158909_010 Hb_004957_040--Hb_158909_010 Hb_003251_020 Hb_003251_020 Hb_004957_040--Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_004957_040--Hb_000107_690 Hb_086639_110 Hb_086639_110 Hb_004957_040--Hb_086639_110 Hb_037000_010--Hb_158909_010 Hb_037000_010--Hb_003251_020 Hb_037000_010--Hb_000107_690 Hb_037000_010--Hb_000134_140 Hb_037000_010--Hb_086639_110 Hb_000134_140--Hb_158909_010 Hb_131748_010 Hb_131748_010 Hb_000134_140--Hb_131748_010 Hb_000134_140--Hb_003251_020 Hb_000134_140--Hb_000107_690 Hb_158909_010--Hb_003251_020 Hb_158909_010--Hb_000107_690 Hb_158909_010--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_158909_010--Hb_000330_010 Hb_003251_020--Hb_000107_690 Hb_003251_020--Hb_086639_110 Hb_003251_020--Hb_000330_010 Hb_000107_690--Hb_086639_110 Hb_000107_690--Hb_000330_010 Hb_086639_110--Hb_000330_010 Hb_000130_430 Hb_000130_430 Hb_086639_110--Hb_000130_430 Hb_001136_150 Hb_001136_150 Hb_086639_110--Hb_001136_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0388232 0.167397 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis