Hb_003420_010

Information

Type -
Description -
Location Contig3420: 20342-20888
Sequence    

Annotation

kegg
ID rcu:RCOM_0610850
description zinc finger protein, putative
nr
ID XP_002522021.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SVU5
description GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1
trembl
ID B9S7Q2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0610850 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g33370-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003420_010 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_164853_010 0.0563364234 - - Patatin precursor, putative [Ricinus communis]
3 Hb_000336_010 0.0648537034 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
4 Hb_000175_080 0.0673890714 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
5 Hb_086720_010 0.0697222237 - - CTV.19 [Citrus trifoliata]
6 Hb_007407_020 0.0697387984 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000295_140 0.0697477148 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
8 Hb_032907_020 0.0697759588 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_053224_010 0.0701786944 - - PREDICTED: protein argonaute 16 isoform X2 [Jatropha curcas]
10 Hb_168451_010 0.0702163036 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
11 Hb_138485_010 0.0703522347 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
12 Hb_003784_030 0.0715981421 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008887_060 0.0722170544 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
14 Hb_001021_190 0.0722930275 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_011515_020 0.0730427457 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
16 Hb_004117_220 0.0739847663 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
17 Hb_000378_020 0.0740660638 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
18 Hb_004724_280 0.0743342976 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000123_080 0.0744330945 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
20 Hb_013405_170 0.0746624126 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003420_010 Hb_003420_010 Hb_164853_010 Hb_164853_010 Hb_003420_010--Hb_164853_010 Hb_000336_010 Hb_000336_010 Hb_003420_010--Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_003420_010--Hb_000175_080 Hb_086720_010 Hb_086720_010 Hb_003420_010--Hb_086720_010 Hb_007407_020 Hb_007407_020 Hb_003420_010--Hb_007407_020 Hb_000295_140 Hb_000295_140 Hb_003420_010--Hb_000295_140 Hb_012675_010 Hb_012675_010 Hb_164853_010--Hb_012675_010 Hb_000141_050 Hb_000141_050 Hb_164853_010--Hb_000141_050 Hb_013394_110 Hb_013394_110 Hb_164853_010--Hb_013394_110 Hb_005666_010 Hb_005666_010 Hb_164853_010--Hb_005666_010 Hb_164853_010--Hb_000336_010 Hb_000336_010--Hb_000175_080 Hb_004724_280 Hb_004724_280 Hb_000336_010--Hb_004724_280 Hb_001123_330 Hb_001123_330 Hb_000336_010--Hb_001123_330 Hb_003185_040 Hb_003185_040 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010 Hb_000175_080--Hb_004724_280 Hb_000175_080--Hb_001123_330 Hb_003680_180 Hb_003680_180 Hb_000175_080--Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_000175_080--Hb_000059_190 Hb_086720_010--Hb_007407_020 Hb_086720_010--Hb_000295_140 Hb_032907_020 Hb_032907_020 Hb_086720_010--Hb_032907_020 Hb_053224_010 Hb_053224_010 Hb_086720_010--Hb_053224_010 Hb_138485_010 Hb_138485_010 Hb_086720_010--Hb_138485_010 Hb_168451_010 Hb_168451_010 Hb_086720_010--Hb_168451_010 Hb_007407_020--Hb_000295_140 Hb_007407_020--Hb_032907_020 Hb_007407_020--Hb_138485_010 Hb_007407_020--Hb_053224_010 Hb_007407_020--Hb_168451_010 Hb_000295_140--Hb_032907_020 Hb_000295_140--Hb_053224_010 Hb_000295_140--Hb_168451_010 Hb_000295_140--Hb_138485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 9.52736 13.9504 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.229671

CAGE analysis