Hb_001123_330

Information

Type -
Description -
Location Contig1123: 295891-298766
Sequence    

Annotation

kegg
ID rcu:RCOM_1438140
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_012088729.1
description PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID A0A067JHE8
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_23105 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03773: 295917-298938 , PASA_asmbl_03774: 295864-297618
cDNA
(Sanger)
(ID:Location)		 019_L20.ab1: 295864-297618

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_330 0.0 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
2 Hb_004724_280 0.0502362396 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000336_010 0.0620239401 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
4 Hb_000175_080 0.0662227088 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
5 Hb_003680_180 0.0853928959 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
6 Hb_003185_040 0.0853963593 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
7 Hb_007474_010 0.0900105119 - - vacuolar invertase [Manihot esculenta]
8 Hb_003420_010 0.0913583515 - - zinc finger protein, putative [Ricinus communis]
9 Hb_002078_070 0.1042930215 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000089_090 0.1050980376 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
11 Hb_109304_010 0.1056306172 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
12 Hb_105377_010 0.1060814503 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
13 Hb_000035_230 0.108601205 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
14 Hb_003464_010 0.1096914505 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000059_190 0.1106861759 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
16 Hb_087717_010 0.1107059391 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
17 Hb_004880_040 0.1122748553 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
18 Hb_000272_060 0.1142514271 - - unnamed protein product [Vitis vinifera]
19 Hb_002490_070 0.1142533818 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
20 Hb_000012_360 0.1142566379 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001123_330 Hb_001123_330 Hb_004724_280 Hb_004724_280 Hb_001123_330--Hb_004724_280 Hb_000336_010 Hb_000336_010 Hb_001123_330--Hb_000336_010 Hb_000175_080 Hb_000175_080 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_001123_330--Hb_003185_040 Hb_007474_010 Hb_007474_010 Hb_001123_330--Hb_007474_010 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_000175_080 Hb_003420_010 Hb_003420_010 Hb_004724_280--Hb_003420_010 Hb_004724_280--Hb_007474_010 Hb_002078_070 Hb_002078_070 Hb_004724_280--Hb_002078_070 Hb_000336_010--Hb_000175_080 Hb_000336_010--Hb_003420_010 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010 Hb_000175_080--Hb_003420_010 Hb_000175_080--Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_000175_080--Hb_000059_190 Hb_003680_180--Hb_000059_190 Hb_000134_300 Hb_000134_300 Hb_003680_180--Hb_000134_300 Hb_002790_010 Hb_002790_010 Hb_003680_180--Hb_002790_010 Hb_000802_070 Hb_000802_070 Hb_003680_180--Hb_000802_070 Hb_004880_040 Hb_004880_040 Hb_003185_040--Hb_004880_040 Hb_003185_040--Hb_000059_190 Hb_003085_070 Hb_003085_070 Hb_003185_040--Hb_003085_070 Hb_003185_040--Hb_105377_010 Hb_007474_010--Hb_000336_010 Hb_007474_010--Hb_004880_040 Hb_007474_010--Hb_000175_080 Hb_003464_010 Hb_003464_010 Hb_007474_010--Hb_003464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0416188 4.43879 4.95819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0422798 0.165581

CAGE analysis