Hb_007474_010

Information

Type -
Description -
Location Contig7474: 9764-13782
Sequence    

Annotation

kegg
ID rcu:RCOM_0195660
description Acid beta-fructofuranosidase precursor, putative (EC:3.2.1.26)
nr
ID AFH77957.1
description vacuolar invertase [Manihot esculenta]
swissprot
ID P29001
description Acid beta-fructofuranosidase OS=Vigna radiata var. radiata GN=INVA PE=1 SV=1
trembl
ID I0CL57
description Vacuolar invertase OS=Manihot esculenta GN=VINV2 PE=2 SV=1
Gene Ontology
ID GO:0004575
description acid beta-fructofuranosidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56699: 9532-9686 , PASA_asmbl_56700: 9713-13771 , PASA_asmbl_56701: 9773-13771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007474_010 0.0 - - vacuolar invertase [Manihot esculenta]
2 Hb_004724_280 0.0802361212 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001123_330 0.0900105119 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_000336_010 0.1088837647 transcription factor TF Family: C3H zinc finger family protein [Populus trichocarpa]
5 Hb_004880_040 0.1132651245 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
6 Hb_000175_080 0.1177920592 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
7 Hb_003464_010 0.1184159052 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003055_160 0.1190079885 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
9 Hb_003185_040 0.1203326811 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
10 Hb_105377_010 0.1219235374 - - hypothetical protein PRUPE_ppa001414mg [Prunus persica]
11 Hb_000700_020 0.1238495446 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
12 Hb_003420_010 0.1262746078 - - zinc finger protein, putative [Ricinus communis]
13 Hb_087717_010 0.1268171682 - - hypothetical protein JCGZ_01246 [Jatropha curcas]
14 Hb_002078_070 0.1275196096 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000089_090 0.1309132533 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
16 Hb_000035_230 0.1332493209 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
17 Hb_118282_020 0.1362561826 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
18 Hb_003680_180 0.1372632582 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_123713_010 0.1379707599 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000679_290 0.1399141408 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007474_010 Hb_007474_010 Hb_004724_280 Hb_004724_280 Hb_007474_010--Hb_004724_280 Hb_001123_330 Hb_001123_330 Hb_007474_010--Hb_001123_330 Hb_000336_010 Hb_000336_010 Hb_007474_010--Hb_000336_010 Hb_004880_040 Hb_004880_040 Hb_007474_010--Hb_004880_040 Hb_000175_080 Hb_000175_080 Hb_007474_010--Hb_000175_080 Hb_003464_010 Hb_003464_010 Hb_007474_010--Hb_003464_010 Hb_004724_280--Hb_000336_010 Hb_004724_280--Hb_001123_330 Hb_004724_280--Hb_000175_080 Hb_003420_010 Hb_003420_010 Hb_004724_280--Hb_003420_010 Hb_002078_070 Hb_002078_070 Hb_004724_280--Hb_002078_070 Hb_001123_330--Hb_000336_010 Hb_001123_330--Hb_000175_080 Hb_003680_180 Hb_003680_180 Hb_001123_330--Hb_003680_180 Hb_003185_040 Hb_003185_040 Hb_001123_330--Hb_003185_040 Hb_000336_010--Hb_000175_080 Hb_000336_010--Hb_003420_010 Hb_000336_010--Hb_003185_040 Hb_105377_010 Hb_105377_010 Hb_000336_010--Hb_105377_010 Hb_004880_040--Hb_003185_040 Hb_004880_040--Hb_105377_010 Hb_003598_020 Hb_003598_020 Hb_004880_040--Hb_003598_020 Hb_001856_210 Hb_001856_210 Hb_004880_040--Hb_001856_210 Hb_000878_080 Hb_000878_080 Hb_004880_040--Hb_000878_080 Hb_003085_070 Hb_003085_070 Hb_004880_040--Hb_003085_070 Hb_000175_080--Hb_003420_010 Hb_000175_080--Hb_003680_180 Hb_000059_190 Hb_000059_190 Hb_000175_080--Hb_000059_190 Hb_012092_040 Hb_012092_040 Hb_003464_010--Hb_012092_040 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_010080_050 Hb_010080_050 Hb_003464_010--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_003464_010--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_003464_010--Hb_000035_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0358839 2.27303 131.188 159.799 0 0.0768701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.855785 2.85385 0.670456 1.26828 5.74107

CAGE analysis