Hb_003085_070

Information

Type -
Description -
Location Contig3085: 83152-84992
Sequence    

Annotation

kegg
ID rcu:RCOM_0786450
description Polygalacturonase non-catalytic subunit AroGP2 precursor, putative
nr
ID XP_012090065.1
description PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
swissprot
ID Q942D4
description BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1
trembl
ID A0A067JH57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25969 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32555: 82959-84068 , PASA_asmbl_32556: 64554-83894 , PASA_asmbl_32557: 84069-85007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003085_070 0.0 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
2 Hb_003006_070 0.0584975222 - - aquaporin [Manihot esculenta]
3 Hb_001623_250 0.0829779808 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
4 Hb_003185_040 0.0844275067 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
5 Hb_002836_110 0.0900035673 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
6 Hb_006614_020 0.0911609092 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
7 Hb_000375_220 0.0941397983 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
8 Hb_004410_020 0.0953354525 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_004128_150 0.0954758277 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
10 Hb_001349_050 0.0962247272 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
11 Hb_004880_040 0.0990210667 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
12 Hb_002030_010 0.09954976 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
13 Hb_002818_060 0.1062101717 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000363_390 0.1063553989 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_002894_060 0.1095941634 - - respiratory burst oxidase D [Manihot esculenta]
16 Hb_000373_020 0.1150303321 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
17 Hb_000127_240 0.1159062411 - - SAUR39 [Populus tomentosa]
18 Hb_000059_190 0.1167820635 - - PREDICTED: uncharacterized protein LOC105121874 [Populus euphratica]
19 Hb_004143_090 0.1204456141 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_004007_050 0.120474392 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]

Gene co-expression network

sample Hb_003085_070 Hb_003085_070 Hb_003006_070 Hb_003006_070 Hb_003085_070--Hb_003006_070 Hb_001623_250 Hb_001623_250 Hb_003085_070--Hb_001623_250 Hb_003185_040 Hb_003185_040 Hb_003085_070--Hb_003185_040 Hb_002836_110 Hb_002836_110 Hb_003085_070--Hb_002836_110 Hb_006614_020 Hb_006614_020 Hb_003085_070--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_003085_070--Hb_000375_220 Hb_003006_070--Hb_001623_250 Hb_003006_070--Hb_000375_220 Hb_003006_070--Hb_002836_110 Hb_003006_070--Hb_006614_020 Hb_001349_050 Hb_001349_050 Hb_003006_070--Hb_001349_050 Hb_001623_250--Hb_001349_050 Hb_001623_250--Hb_002836_110 Hb_002894_060 Hb_002894_060 Hb_001623_250--Hb_002894_060 Hb_002818_060 Hb_002818_060 Hb_001623_250--Hb_002818_060 Hb_004880_040 Hb_004880_040 Hb_003185_040--Hb_004880_040 Hb_000059_190 Hb_000059_190 Hb_003185_040--Hb_000059_190 Hb_001123_330 Hb_001123_330 Hb_003185_040--Hb_001123_330 Hb_000336_010 Hb_000336_010 Hb_003185_040--Hb_000336_010 Hb_105377_010 Hb_105377_010 Hb_003185_040--Hb_105377_010 Hb_009113_020 Hb_009113_020 Hb_002836_110--Hb_009113_020 Hb_002836_110--Hb_001349_050 Hb_000538_290 Hb_000538_290 Hb_002836_110--Hb_000538_290 Hb_000127_240 Hb_000127_240 Hb_006614_020--Hb_000127_240 Hb_002030_010 Hb_002030_010 Hb_006614_020--Hb_002030_010 Hb_006614_020--Hb_000375_220 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_007760_060 Hb_007760_060 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050 Hb_000375_220--Hb_002030_010 Hb_000375_220--Hb_000127_240 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_009847_010 Hb_009847_010 Hb_000375_220--Hb_009847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159333 0.825735 46.3835 41.156 0.177388 0.0643133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0562047 0.241277 8.31799

CAGE analysis