Hb_002030_010

Information

Type -
Description -
Location Contig2030: 3037-3582
Sequence    

Annotation

kegg
ID rcu:RCOM_0071070
description hypothetical protein
nr
ID KDP29746.1
description hypothetical protein JCGZ_18681 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18681 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002030_010 0.0 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
2 Hb_000127_240 0.0322382052 - - SAUR39 [Populus tomentosa]
3 Hb_006614_020 0.0521498853 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
4 Hb_000375_220 0.0540740592 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
5 Hb_007760_060 0.0594243522 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
6 Hb_009847_010 0.0790763864 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
7 Hb_003006_070 0.0859579023 - - aquaporin [Manihot esculenta]
8 Hb_007576_090 0.0882201919 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
9 Hb_007044_240 0.0904112332 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
10 Hb_180535_010 0.0923588122 - - -
11 Hb_000847_090 0.0923779254 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_004128_150 0.0950484362 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
13 Hb_000556_060 0.0965882977 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
14 Hb_003085_070 0.09954976 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
15 Hb_000375_100 0.1005922916 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
16 Hb_000676_360 0.1016503395 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
17 Hb_002307_140 0.103123963 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
18 Hb_057575_010 0.1041938574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_072952_010 0.1046583285 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
20 Hb_000010_430 0.1062399269 - - Esterase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002030_010 Hb_002030_010 Hb_000127_240 Hb_000127_240 Hb_002030_010--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_002030_010--Hb_006614_020 Hb_000375_220 Hb_000375_220 Hb_002030_010--Hb_000375_220 Hb_007760_060 Hb_007760_060 Hb_002030_010--Hb_007760_060 Hb_009847_010 Hb_009847_010 Hb_002030_010--Hb_009847_010 Hb_003006_070 Hb_003006_070 Hb_002030_010--Hb_003006_070 Hb_000127_240--Hb_007760_060 Hb_000127_240--Hb_006614_020 Hb_000127_240--Hb_000375_220 Hb_007576_090 Hb_007576_090 Hb_000127_240--Hb_007576_090 Hb_180535_010 Hb_180535_010 Hb_000127_240--Hb_180535_010 Hb_006614_020--Hb_000375_220 Hb_004128_150 Hb_004128_150 Hb_006614_020--Hb_004128_150 Hb_006614_020--Hb_007760_060 Hb_004007_050 Hb_004007_050 Hb_006614_020--Hb_004007_050 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_000375_220--Hb_003006_070 Hb_000375_220--Hb_009847_010 Hb_000375_100 Hb_000375_100 Hb_007760_060--Hb_000375_100 Hb_007760_060--Hb_007576_090 Hb_000010_430 Hb_000010_430 Hb_007760_060--Hb_000010_430 Hb_007760_060--Hb_180535_010 Hb_072952_010 Hb_072952_010 Hb_007760_060--Hb_072952_010 Hb_000556_060 Hb_000556_060 Hb_009847_010--Hb_000556_060 Hb_009847_010--Hb_000847_090 Hb_024071_030 Hb_024071_030 Hb_009847_010--Hb_024071_030 Hb_007044_240 Hb_007044_240 Hb_009847_010--Hb_007044_240 Hb_009847_010--Hb_000127_240 Hb_001623_250 Hb_001623_250 Hb_003006_070--Hb_001623_250 Hb_003085_070 Hb_003085_070 Hb_003006_070--Hb_003085_070 Hb_002836_110 Hb_002836_110 Hb_003006_070--Hb_002836_110 Hb_003006_070--Hb_006614_020 Hb_001349_050 Hb_001349_050 Hb_003006_070--Hb_001349_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.50183 1.19134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.34875

CAGE analysis