Hb_004128_150

Information

Type -
Description -
Location Contig4128: 123175-124293
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08360g
description POPTRDRAFT_777462; hypothetical protein
nr
ID XP_002322844.1
description hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IIY0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08360g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_150 0.0 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
2 Hb_004007_050 0.04452421 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
3 Hb_006614_020 0.059021314 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
4 Hb_023640_020 0.0676651313 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011310_170 0.0745674033 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_001958_040 0.0760588171 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
7 Hb_004453_160 0.08443422 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001301_310 0.0868110742 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000375_220 0.0904588799 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
10 Hb_000127_240 0.0909341905 - - SAUR39 [Populus tomentosa]
11 Hb_003006_070 0.0922117184 - - aquaporin [Manihot esculenta]
12 Hb_000031_240 0.0923276934 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_002030_010 0.0950484362 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
14 Hb_000073_040 0.0952823427 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
15 Hb_003085_070 0.0954758277 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
16 Hb_000160_190 0.095706238 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
17 Hb_007760_060 0.0959528903 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
18 Hb_001349_050 0.0966076743 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
19 Hb_019516_010 0.0980491742 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
20 Hb_049846_010 0.0986986559 - - hypothetical protein JCGZ_23781 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_150 Hb_004128_150 Hb_004007_050 Hb_004007_050 Hb_004128_150--Hb_004007_050 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_023640_020 Hb_023640_020 Hb_004128_150--Hb_023640_020 Hb_011310_170 Hb_011310_170 Hb_004128_150--Hb_011310_170 Hb_001958_040 Hb_001958_040 Hb_004128_150--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_004128_150--Hb_004453_160 Hb_004007_050--Hb_004453_160 Hb_004007_050--Hb_001958_040 Hb_004007_050--Hb_023640_020 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_004007_050--Hb_011310_170 Hb_000127_240 Hb_000127_240 Hb_006614_020--Hb_000127_240 Hb_002030_010 Hb_002030_010 Hb_006614_020--Hb_002030_010 Hb_000375_220 Hb_000375_220 Hb_006614_020--Hb_000375_220 Hb_007760_060 Hb_007760_060 Hb_006614_020--Hb_007760_060 Hb_006614_020--Hb_004007_050 Hb_000160_190 Hb_000160_190 Hb_023640_020--Hb_000160_190 Hb_004137_110 Hb_004137_110 Hb_023640_020--Hb_004137_110 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_005977_080 Hb_005977_080 Hb_023640_020--Hb_005977_080 Hb_011310_170--Hb_000031_240 Hb_011310_170--Hb_023640_020 Hb_011310_170--Hb_005977_080 Hb_000331_170 Hb_000331_170 Hb_011310_170--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_001958_040--Hb_000073_040 Hb_000397_060 Hb_000397_060 Hb_001958_040--Hb_000397_060 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_007221_020 Hb_007221_020 Hb_004453_160--Hb_007221_020 Hb_132840_190 Hb_132840_190 Hb_004453_160--Hb_132840_190 Hb_004453_160--Hb_000031_240 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0285674 0.903872 0.619407 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.206094

CAGE analysis