Hb_004453_160

Information

Type -
Description -
Location Contig4453: 102604-105271
Sequence    

Annotation

kegg
ID rcu:RCOM_0925040
description hypothetical protein
nr
ID XP_002515557.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID O24329
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0925040 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42987: 102600-105211 , PASA_asmbl_42988: 102600-105211 , PASA_asmbl_42989: 102600-105172 , PASA_asmbl_42990: 102602-104365
cDNA
(Sanger)
(ID:Location)		 021_N01.ab1: 103240-104365 , 039_A18.ab1: 103290-104365 , 041_E22.ab1: 104655-105211 , 048_H02.ab1: 103580-104331

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004007_050 0.0547955734 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
3 Hb_007221_020 0.0694203916 - - FAD-binding domain-containing family protein [Populus trichocarpa]
4 Hb_132840_190 0.0722058904 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
5 Hb_000031_240 0.0787000921 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_004128_150 0.08443422 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
7 Hb_002307_140 0.0865153747 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
8 Hb_031321_020 0.0869346412 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
9 Hb_000331_170 0.0884571427 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
10 Hb_006614_020 0.0894511757 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_019516_010 0.0901362369 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
12 Hb_001958_040 0.0901559804 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
13 Hb_007044_240 0.0912172863 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
14 Hb_007218_050 0.0916722205 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000139_040 0.0926776 - - spermine synthase, putative [Ricinus communis]
16 Hb_000556_060 0.0940000094 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
17 Hb_000375_220 0.0946689596 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
18 Hb_000847_090 0.094980006 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
19 Hb_006711_030 0.0951144705 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
20 Hb_009847_010 0.0957135767 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]

Gene co-expression network

sample Hb_004453_160 Hb_004453_160 Hb_004007_050 Hb_004007_050 Hb_004453_160--Hb_004007_050 Hb_007221_020 Hb_007221_020 Hb_004453_160--Hb_007221_020 Hb_132840_190 Hb_132840_190 Hb_004453_160--Hb_132840_190 Hb_000031_240 Hb_000031_240 Hb_004453_160--Hb_000031_240 Hb_004128_150 Hb_004128_150 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_004007_050--Hb_004128_150 Hb_001958_040 Hb_001958_040 Hb_004007_050--Hb_001958_040 Hb_023640_020 Hb_023640_020 Hb_004007_050--Hb_023640_020 Hb_004007_050--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_004007_050--Hb_011310_170 Hb_031321_020 Hb_031321_020 Hb_007221_020--Hb_031321_020 Hb_007922_030 Hb_007922_030 Hb_007221_020--Hb_007922_030 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_007221_020--Hb_132840_190 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_132840_190--Hb_007922_030 Hb_001652_100 Hb_001652_100 Hb_132840_190--Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_132840_190--Hb_008021_060 Hb_000089_170 Hb_000089_170 Hb_132840_190--Hb_000089_170 Hb_000331_170 Hb_000331_170 Hb_000031_240--Hb_000331_170 Hb_000031_240--Hb_001958_040 Hb_000031_240--Hb_011310_170 Hb_005977_080 Hb_005977_080 Hb_000031_240--Hb_005977_080 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_004128_150--Hb_023640_020 Hb_004128_150--Hb_011310_170 Hb_004128_150--Hb_001958_040 Hb_007218_050 Hb_007218_050 Hb_002307_140--Hb_007218_050 Hb_006711_030 Hb_006711_030 Hb_002307_140--Hb_006711_030 Hb_180535_010 Hb_180535_010 Hb_002307_140--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_002307_140--Hb_000816_180 Hb_007044_240 Hb_007044_240 Hb_002307_140--Hb_007044_240 Hb_007576_090 Hb_007576_090 Hb_002307_140--Hb_007576_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6861 7.70885 406.153 266.341 0.26378 1.25316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103017 0.0810423 0.0505863 0.097162 141.285

CAGE analysis