Hb_011310_170

Information

Type transcription factor
Description TF Family: ERF
Location Contig11310: 96076-96852
Sequence    

Annotation

kegg
ID rcu:RCOM_0924050
description DNA binding protein, putative
nr
ID XP_002515519.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q3E958
description Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1
trembl
ID B9RP50
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0924050 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor shine 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03918: 95804-96988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011310_170 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_004007_050 0.0731180979 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
3 Hb_004128_150 0.0745674033 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
4 Hb_000031_240 0.0813456852 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_023640_020 0.0871271943 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005977_080 0.0954990456 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
7 Hb_000331_170 0.0959333914 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
8 Hb_004453_160 0.0959675675 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001958_040 0.0961083879 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
10 Hb_006614_020 0.0977778759 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
11 Hb_049846_010 0.1007651912 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
12 Hb_000160_190 0.1008443373 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
13 Hb_000072_230 0.1082573724 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
14 Hb_019516_010 0.111453481 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
15 Hb_001301_310 0.1153398387 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000139_040 0.1156441489 - - spermine synthase, putative [Ricinus communis]
17 Hb_007221_020 0.1169336206 - - FAD-binding domain-containing family protein [Populus trichocarpa]
18 Hb_000397_060 0.1172265958 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
19 Hb_031321_020 0.1184311568 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
20 Hb_000073_040 0.1189170501 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_011310_170 Hb_011310_170 Hb_004007_050 Hb_004007_050 Hb_011310_170--Hb_004007_050 Hb_004128_150 Hb_004128_150 Hb_011310_170--Hb_004128_150 Hb_000031_240 Hb_000031_240 Hb_011310_170--Hb_000031_240 Hb_023640_020 Hb_023640_020 Hb_011310_170--Hb_023640_020 Hb_005977_080 Hb_005977_080 Hb_011310_170--Hb_005977_080 Hb_000331_170 Hb_000331_170 Hb_011310_170--Hb_000331_170 Hb_004007_050--Hb_004128_150 Hb_004453_160 Hb_004453_160 Hb_004007_050--Hb_004453_160 Hb_001958_040 Hb_001958_040 Hb_004007_050--Hb_001958_040 Hb_004007_050--Hb_023640_020 Hb_004007_050--Hb_000031_240 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_004128_150--Hb_023640_020 Hb_004128_150--Hb_001958_040 Hb_004128_150--Hb_004453_160 Hb_000031_240--Hb_000331_170 Hb_000031_240--Hb_001958_040 Hb_000031_240--Hb_004453_160 Hb_000031_240--Hb_005977_080 Hb_000160_190 Hb_000160_190 Hb_023640_020--Hb_000160_190 Hb_004137_110 Hb_004137_110 Hb_023640_020--Hb_004137_110 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_023640_020--Hb_005977_080 Hb_005977_080--Hb_004137_110 Hb_005977_080--Hb_000160_190 Hb_003207_120 Hb_003207_120 Hb_005977_080--Hb_003207_120 Hb_005977_080--Hb_000331_170 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_000331_170--Hb_004453_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.465468 10.8279 7.07105 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107364 0.0843714 0 0 2.91912

CAGE analysis