Hb_005276_140

Information

Type -
Description -
Location Contig5276: 157360-158259
Sequence    

Annotation

kegg
ID rcu:RCOM_0558280
description hypothetical protein
nr
ID XP_002520750.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8GXU9
description Protein FANTASTIC FOUR 2 OS=Arabidopsis thaliana GN=FAF2 PE=2 SV=1
trembl
ID B9S431
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0558280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47098: 157169-158351
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_170 0.0797418437 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
3 Hb_132840_190 0.0830343157 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
4 Hb_000058_180 0.083228283 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
5 Hb_000312_100 0.0872668464 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
6 Hb_001519_090 0.0889531685 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
7 Hb_007221_020 0.0924231854 - - FAD-binding domain-containing family protein [Populus trichocarpa]
8 Hb_031321_020 0.0945041526 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
9 Hb_023827_030 0.0948994798 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
10 Hb_008021_060 0.0971382912 - - Squalene monooxygenase, putative [Ricinus communis]
11 Hb_007922_030 0.0983119755 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
12 Hb_129956_010 0.099861168 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
13 Hb_004453_160 0.1009992604 - - conserved hypothetical protein [Ricinus communis]
14 Hb_016297_010 0.1023102504 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
15 Hb_001439_080 0.1036038268 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_000031_240 0.1044628169 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_001652_100 0.1068670638 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
18 Hb_002044_100 0.1076150618 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
19 Hb_001258_130 0.1078556868 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
20 Hb_001511_210 0.1096515039 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_005276_140 Hb_005276_140 Hb_000331_170 Hb_000331_170 Hb_005276_140--Hb_000331_170 Hb_132840_190 Hb_132840_190 Hb_005276_140--Hb_132840_190 Hb_000058_180 Hb_000058_180 Hb_005276_140--Hb_000058_180 Hb_000312_100 Hb_000312_100 Hb_005276_140--Hb_000312_100 Hb_001519_090 Hb_001519_090 Hb_005276_140--Hb_001519_090 Hb_007221_020 Hb_007221_020 Hb_005276_140--Hb_007221_020 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_000331_170--Hb_007221_020 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_132840_190--Hb_007221_020 Hb_007922_030 Hb_007922_030 Hb_132840_190--Hb_007922_030 Hb_001652_100 Hb_001652_100 Hb_132840_190--Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_132840_190--Hb_008021_060 Hb_132840_190--Hb_004453_160 Hb_000089_170 Hb_000089_170 Hb_132840_190--Hb_000089_170 Hb_000058_180--Hb_001652_100 Hb_000058_180--Hb_007922_030 Hb_000538_090 Hb_000538_090 Hb_000058_180--Hb_000538_090 Hb_008147_020 Hb_008147_020 Hb_000058_180--Hb_008147_020 Hb_000058_180--Hb_008021_060 Hb_001642_020 Hb_001642_020 Hb_000058_180--Hb_001642_020 Hb_000312_100--Hb_001519_090 Hb_023827_030 Hb_023827_030 Hb_000312_100--Hb_023827_030 Hb_129956_010 Hb_129956_010 Hb_000312_100--Hb_129956_010 Hb_000333_020 Hb_000333_020 Hb_000312_100--Hb_000333_020 Hb_029695_090 Hb_029695_090 Hb_000312_100--Hb_029695_090 Hb_003207_120 Hb_003207_120 Hb_001519_090--Hb_003207_120 Hb_001519_090--Hb_129956_010 Hb_000139_040 Hb_000139_040 Hb_001519_090--Hb_000139_040 Hb_001519_090--Hb_029695_090 Hb_007221_020--Hb_031321_020 Hb_007221_020--Hb_007922_030 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_007221_020--Hb_004453_160 Hb_007221_020--Hb_019516_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.91613 25.1401 14.6587 0.0759487 0.0445117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115771 0.0910436 0.0831632 0.0183573 12.9317

CAGE analysis