Hb_007221_020

Information

Type -
Description -
Location Contig7221: 4769-6001
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16170g
description POPTRDRAFT_772214; FAD-binding domain-containing family protein
nr
ID XP_002317086.1
description FAD-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9SVG4
description Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2
trembl
ID B9I0Y2
description FAD-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0011s16170g PE=4 SV=1
Gene Ontology
ID GO:0009507
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55706: 5786-6146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007221_020 0.0 - - FAD-binding domain-containing family protein [Populus trichocarpa]
2 Hb_031321_020 0.0376662669 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
3 Hb_007922_030 0.048263898 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
4 Hb_031022_030 0.0526426377 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
5 Hb_132840_190 0.0572968813 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
6 Hb_004453_160 0.0694203916 - - conserved hypothetical protein [Ricinus communis]
7 Hb_019516_010 0.0695532594 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
8 Hb_001021_120 0.0702985606 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
9 Hb_000556_060 0.0754450517 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
10 Hb_000331_170 0.0768881612 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
11 Hb_000058_180 0.0782133596 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
12 Hb_001652_100 0.0788098434 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
13 Hb_004007_050 0.0792639075 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
14 Hb_000847_090 0.0794834003 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
15 Hb_008021_060 0.0800823945 - - Squalene monooxygenase, putative [Ricinus communis]
16 Hb_009847_010 0.0832327533 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
17 Hb_024071_030 0.0865522597 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
18 Hb_000134_130 0.0869615093 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
19 Hb_007120_120 0.0901491573 - - protein binding protein, putative [Ricinus communis]
20 Hb_009663_020 0.0906598725 - - -

Gene co-expression network

sample Hb_007221_020 Hb_007221_020 Hb_031321_020 Hb_031321_020 Hb_007221_020--Hb_031321_020 Hb_007922_030 Hb_007922_030 Hb_007221_020--Hb_007922_030 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_004453_160 Hb_004453_160 Hb_007221_020--Hb_004453_160 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_031321_020--Hb_031022_030 Hb_001021_120 Hb_001021_120 Hb_031321_020--Hb_001021_120 Hb_031321_020--Hb_007922_030 Hb_000134_130 Hb_000134_130 Hb_031321_020--Hb_000134_130 Hb_000331_170 Hb_000331_170 Hb_031321_020--Hb_000331_170 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_007922_030--Hb_001021_120 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_031022_030--Hb_001021_120 Hb_024071_030 Hb_024071_030 Hb_031022_030--Hb_024071_030 Hb_031022_030--Hb_007922_030 Hb_000556_060 Hb_000556_060 Hb_031022_030--Hb_000556_060 Hb_132840_190--Hb_007922_030 Hb_132840_190--Hb_001652_100 Hb_132840_190--Hb_008021_060 Hb_132840_190--Hb_004453_160 Hb_000089_170 Hb_000089_170 Hb_132840_190--Hb_000089_170 Hb_004007_050 Hb_004007_050 Hb_004453_160--Hb_004007_050 Hb_000031_240 Hb_000031_240 Hb_004453_160--Hb_000031_240 Hb_004128_150 Hb_004128_150 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_019516_010--Hb_000134_130 Hb_002894_060 Hb_002894_060 Hb_019516_010--Hb_002894_060 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_019516_010--Hb_004007_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0772033 3.57993 2.72595 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.012371 1.66501

CAGE analysis