Hb_002894_060

Information

Type -
Description -
Location Contig2894: 56309-60491
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15810g
description POPTRDRAFT_712105; hypothetical protein
nr
ID ADR70882.1
description respiratory burst oxidase D [Manihot esculenta]
swissprot
ID Q9FIJ0
description Respiratory burst oxidase homolog protein D OS=Arabidopsis thaliana GN=RBOHD PE=1 SV=1
trembl
ID V9HYS7
description Respiratory burst oxidase D OS=Manihot esculenta GN=RbohD PE=2 SV=1
Gene Ontology
ID GO:0005794
description respiratory burst oxidase homolog protein d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30290: 56981-57430 , PASA_asmbl_30291: 59466-60100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002894_060 0.0 - - respiratory burst oxidase D [Manihot esculenta]
2 Hb_001349_050 0.0467282427 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
3 Hb_001007_020 0.0550174519 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
4 Hb_000418_110 0.0583215858 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
5 Hb_019516_010 0.0759732118 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
6 Hb_000134_130 0.0780176398 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
7 Hb_001623_250 0.0896715164 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
8 Hb_000878_080 0.0907612193 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
9 Hb_002203_010 0.0927197778 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
10 Hb_002818_060 0.0934361617 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000373_020 0.0959281967 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
12 Hb_000359_100 0.0967879567 - - conserved hypothetical protein [Ricinus communis]
13 Hb_040852_010 0.0977082501 - - conserved hypothetical protein [Ricinus communis]
14 Hb_098315_060 0.0980135043 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
15 Hb_003006_070 0.099126989 - - aquaporin [Manihot esculenta]
16 Hb_000320_010 0.0994228094 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000363_390 0.1002441825 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
18 Hb_003894_110 0.101469507 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
19 Hb_005276_190 0.1018045076 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
20 Hb_152910_050 0.1034691167 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002894_060 Hb_002894_060 Hb_001349_050 Hb_001349_050 Hb_002894_060--Hb_001349_050 Hb_001007_020 Hb_001007_020 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_019516_010 Hb_019516_010 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_001623_250 Hb_001623_250 Hb_002894_060--Hb_001623_250 Hb_001349_050--Hb_001623_250 Hb_002818_060 Hb_002818_060 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_001007_020--Hb_000418_110 Hb_001007_020--Hb_000134_130 Hb_174639_010 Hb_174639_010 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001007_020--Hb_001349_050 Hb_000418_110--Hb_000134_130 Hb_000418_110--Hb_019516_010 Hb_007632_160 Hb_007632_160 Hb_000418_110--Hb_007632_160 Hb_098315_060 Hb_098315_060 Hb_000418_110--Hb_098315_060 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_019516_010--Hb_000134_130 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_019516_010--Hb_004007_050 Hb_152910_050 Hb_152910_050 Hb_000134_130--Hb_152910_050 Hb_000134_130--Hb_098315_060 Hb_040852_010 Hb_040852_010 Hb_000134_130--Hb_040852_010 Hb_000134_130--Hb_003894_110 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_003376_020 Hb_003376_020 Hb_000134_130--Hb_003376_020 Hb_001623_250--Hb_003006_070 Hb_002836_110 Hb_002836_110 Hb_001623_250--Hb_002836_110 Hb_003085_070 Hb_003085_070 Hb_001623_250--Hb_003085_070 Hb_001623_250--Hb_002818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.142034 2.36005 2.15053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.075748 0.647401

CAGE analysis