Hb_002818_060

Information

Type -
Description -
Location Contig2818: 75631-78476
Sequence    

Annotation

kegg
ID rcu:RCOM_2127200
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_002535131.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9M115
description Protein S-acyltransferase 18 OS=Arabidopsis thaliana GN=PAT18 PE=2 SV=2
trembl
ID B9TA62
description S-acyltransferase OS=Ricinus communis GN=RCOM_2127200 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein s-acyltransferase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29493: 75562-76301 , PASA_asmbl_29494: 76886-77756 , PASA_asmbl_29495: 77797-78120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002818_060 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001349_050 0.0763246966 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
3 Hb_001623_250 0.0897341494 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
4 Hb_002203_010 0.0910184005 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
5 Hb_000359_100 0.0915133431 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002894_060 0.0934361617 - - respiratory burst oxidase D [Manihot esculenta]
7 Hb_000363_390 0.0973624378 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_002836_110 0.1029825397 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
9 Hb_000373_020 0.1040505967 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
10 Hb_003085_070 0.1062101717 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
11 Hb_000576_140 0.1094993682 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
12 Hb_000022_080 0.1106683923 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_001007_020 0.1107794627 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
14 Hb_000072_230 0.1114130983 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
15 Hb_002053_100 0.1134274573 - - actin binding protein, putative [Ricinus communis]
16 Hb_000830_010 0.1139975811 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000878_080 0.1143673971 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
18 Hb_003006_070 0.1144819851 - - aquaporin [Manihot esculenta]
19 Hb_005276_190 0.1158939092 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
20 Hb_000418_110 0.116112951 - - PREDICTED: protein kinase PINOID [Jatropha curcas]

Gene co-expression network

sample Hb_002818_060 Hb_002818_060 Hb_001349_050 Hb_001349_050 Hb_002818_060--Hb_001349_050 Hb_001623_250 Hb_001623_250 Hb_002818_060--Hb_001623_250 Hb_002203_010 Hb_002203_010 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002894_060 Hb_002894_060 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390 Hb_001349_050--Hb_002894_060 Hb_001349_050--Hb_001623_250 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_019516_010 Hb_019516_010 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100 Hb_001623_250--Hb_003006_070 Hb_002836_110 Hb_002836_110 Hb_001623_250--Hb_002836_110 Hb_003085_070 Hb_003085_070 Hb_001623_250--Hb_003085_070 Hb_001623_250--Hb_002894_060 Hb_000213_020 Hb_000213_020 Hb_002203_010--Hb_000213_020 Hb_002203_010--Hb_000359_100 Hb_002203_010--Hb_001349_050 Hb_004005_060 Hb_004005_060 Hb_002203_010--Hb_004005_060 Hb_000878_080 Hb_000878_080 Hb_002203_010--Hb_000878_080 Hb_002028_270 Hb_002028_270 Hb_000359_100--Hb_002028_270 Hb_000359_100--Hb_004005_060 Hb_001007_020 Hb_001007_020 Hb_000359_100--Hb_001007_020 Hb_001159_090 Hb_001159_090 Hb_000359_100--Hb_001159_090 Hb_002894_060--Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_002894_060--Hb_000418_110 Hb_002894_060--Hb_019516_010 Hb_000134_130 Hb_000134_130 Hb_002894_060--Hb_000134_130 Hb_000363_390--Hb_002894_060 Hb_000363_390--Hb_001007_020 Hb_000320_010 Hb_000320_010 Hb_000363_390--Hb_000320_010 Hb_174639_010 Hb_174639_010 Hb_000363_390--Hb_174639_010 Hb_000363_390--Hb_003085_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439562 0.590467 10.3831 8.38798 0.105091 0.0237683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0308736 0 0.0913037 0.378065 2.03341

CAGE analysis