Hb_001007_020

Information

Type -
Description -
Location Contig1007: 9079-11550
Sequence    

Annotation

kegg
ID rcu:RCOM_0138900
description hypothetical protein
nr
ID XP_012066096.1
description PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
swissprot
ID Q8L9J7
description Bidirectional sugar transporter SWEET1 OS=Arabidopsis thaliana GN=SWEET1 PE=1 SV=1
trembl
ID A0A067L3Q6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25248 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00445: 9257-11522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001007_020 0.0 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
2 Hb_000418_110 0.0463951459 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
3 Hb_002894_060 0.0550174519 - - respiratory burst oxidase D [Manihot esculenta]
4 Hb_000134_130 0.0717323069 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
5 Hb_174639_010 0.0770151602 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_003894_110 0.077467529 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
7 Hb_001349_050 0.0820311996 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
8 Hb_000320_010 0.0832551849 - - conserved hypothetical protein [Ricinus communis]
9 Hb_098315_060 0.0844230326 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
10 Hb_001056_040 0.0860037842 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
11 Hb_040852_010 0.0871857818 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003750_120 0.0884158583 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
13 Hb_000359_100 0.0918607443 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007218_040 0.0935043871 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
15 Hb_019516_010 0.0949831755 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
16 Hb_152910_050 0.0957547607 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
17 Hb_000373_020 0.097912751 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]
18 Hb_000363_390 0.1003474974 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
19 Hb_000028_080 0.1058814772 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
20 Hb_001623_250 0.1058924768 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_001007_020 Hb_001007_020 Hb_000418_110 Hb_000418_110 Hb_001007_020--Hb_000418_110 Hb_002894_060 Hb_002894_060 Hb_001007_020--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_001007_020--Hb_000134_130 Hb_174639_010 Hb_174639_010 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001349_050 Hb_001349_050 Hb_001007_020--Hb_001349_050 Hb_000418_110--Hb_002894_060 Hb_000418_110--Hb_000134_130 Hb_019516_010 Hb_019516_010 Hb_000418_110--Hb_019516_010 Hb_007632_160 Hb_007632_160 Hb_000418_110--Hb_007632_160 Hb_098315_060 Hb_098315_060 Hb_000418_110--Hb_098315_060 Hb_002894_060--Hb_001349_050 Hb_002894_060--Hb_019516_010 Hb_002894_060--Hb_000134_130 Hb_001623_250 Hb_001623_250 Hb_002894_060--Hb_001623_250 Hb_152910_050 Hb_152910_050 Hb_000134_130--Hb_152910_050 Hb_000134_130--Hb_098315_060 Hb_040852_010 Hb_040852_010 Hb_000134_130--Hb_040852_010 Hb_000134_130--Hb_003894_110 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_003376_020 Hb_003376_020 Hb_000134_130--Hb_003376_020 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_003894_110--Hb_040852_010 Hb_003894_110--Hb_152910_050 Hb_003894_110--Hb_098315_060 Hb_003894_110--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_003894_110--Hb_004202_020 Hb_001349_050--Hb_001623_250 Hb_002818_060 Hb_002818_060 Hb_001349_050--Hb_002818_060 Hb_003006_070 Hb_003006_070 Hb_001349_050--Hb_003006_070 Hb_001349_050--Hb_019516_010 Hb_002053_100 Hb_002053_100 Hb_001349_050--Hb_002053_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0285233 5.47058 98.4395 107.828 0.0428724 0.0950402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0650024 0.0511382 0 5.6059 33.8637

CAGE analysis