Hb_001863_330

Information

Type -
Description -
Location Contig1863: 286071-288701
Sequence    

Annotation

kegg
ID rcu:RCOM_1036380
description RNA-binding region-containing protein, putative
nr
ID XP_002513935.1
description RNA-binding region-containing protein, putative [Ricinus communis]
swissprot
ID Q9M1S3
description Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=1
trembl
ID B9RJL6
description RNA-binding region-containing protein, putative OS=Ricinus communis GN=RCOM_1036380 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 38-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18357: 286147-286499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_330 0.0 - - RNA-binding region-containing protein, putative [Ricinus communis]
2 Hb_016333_010 0.0520013806 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_087992_010 0.076579937 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_127839_010 0.0794369893 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
5 Hb_007632_070 0.0798935565 - - kinase, putative [Ricinus communis]
6 Hb_002224_020 0.0821107226 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
7 Hb_000185_180 0.0873678025 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
8 Hb_174639_010 0.0881339543 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000563_470 0.0911704583 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
10 Hb_000676_360 0.1002568454 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
11 Hb_149882_010 0.1076134638 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
12 Hb_001140_300 0.1079543201 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
13 Hb_007477_010 0.1140478089 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
14 Hb_003427_030 0.1178400116 - - -
15 Hb_001047_090 0.1196455617 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
16 Hb_186458_010 0.1228676882 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
17 Hb_004313_010 0.1231633722 - - PREDICTED: patatin-like protein 1 [Prunus mume]
18 Hb_001007_020 0.1241466949 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_031012_030 0.1247948981 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
20 Hb_039222_010 0.1259137561 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001863_330 Hb_001863_330 Hb_016333_010 Hb_016333_010 Hb_001863_330--Hb_016333_010 Hb_087992_010 Hb_087992_010 Hb_001863_330--Hb_087992_010 Hb_127839_010 Hb_127839_010 Hb_001863_330--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_001863_330--Hb_007632_070 Hb_002224_020 Hb_002224_020 Hb_001863_330--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_001863_330--Hb_000185_180 Hb_016333_010--Hb_127839_010 Hb_016333_010--Hb_007632_070 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040 Hb_087992_010--Hb_002224_020 Hb_087992_010--Hb_127839_010 Hb_087992_010--Hb_007632_070 Hb_149882_010 Hb_149882_010 Hb_087992_010--Hb_149882_010 Hb_127839_010--Hb_007632_070 Hb_127839_010--Hb_149882_010 Hb_127839_010--Hb_002224_020 Hb_000563_470 Hb_000563_470 Hb_007632_070--Hb_000563_470 Hb_001140_300 Hb_001140_300 Hb_007632_070--Hb_001140_300 Hb_002224_020--Hb_149882_010 Hb_003427_030 Hb_003427_030 Hb_002224_020--Hb_003427_030 Hb_002224_020--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_000185_180--Hb_007477_010 Hb_000185_180--Hb_003427_030 Hb_000815_010 Hb_000815_010 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.242356 0.362478 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0211902 0.10523

CAGE analysis