Hb_000563_470

Information

Type -
Description -
Location Contig563: 345744-346398
Sequence    

Annotation

kegg
ID rcu:RCOM_0682010
description hypothetical protein
nr
ID XP_012083977.1
description PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48929: 345685-346709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_470 0.0 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
2 Hb_007632_070 0.0650430884 - - kinase, putative [Ricinus communis]
3 Hb_127839_010 0.0852735302 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
4 Hb_001863_330 0.0911704583 - - RNA-binding region-containing protein, putative [Ricinus communis]
5 Hb_002224_020 0.0925013529 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
6 Hb_149882_010 0.097958544 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
7 Hb_016333_010 0.0995243266 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
8 Hb_087992_010 0.1025266645 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_001140_300 0.1130908885 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
10 Hb_000185_180 0.123089925 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
11 Hb_011501_010 0.1231735027 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
12 Hb_003427_030 0.1329482659 - - -
13 Hb_174639_010 0.1358737255 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_005181_170 0.1362263347 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
15 Hb_039222_010 0.1404451864 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
16 Hb_000187_050 0.1456181394 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
17 Hb_025787_020 0.1494175008 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_007218_040 0.1496138261 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
19 Hb_000020_050 0.1504347231 - - PREDICTED: expansin-A6 [Jatropha curcas]
20 Hb_001958_010 0.1505865988 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_000563_470 Hb_000563_470 Hb_007632_070 Hb_007632_070 Hb_000563_470--Hb_007632_070 Hb_127839_010 Hb_127839_010 Hb_000563_470--Hb_127839_010 Hb_001863_330 Hb_001863_330 Hb_000563_470--Hb_001863_330 Hb_002224_020 Hb_002224_020 Hb_000563_470--Hb_002224_020 Hb_149882_010 Hb_149882_010 Hb_000563_470--Hb_149882_010 Hb_016333_010 Hb_016333_010 Hb_000563_470--Hb_016333_010 Hb_007632_070--Hb_127839_010 Hb_007632_070--Hb_016333_010 Hb_007632_070--Hb_001863_330 Hb_087992_010 Hb_087992_010 Hb_007632_070--Hb_087992_010 Hb_001140_300 Hb_001140_300 Hb_007632_070--Hb_001140_300 Hb_127839_010--Hb_016333_010 Hb_127839_010--Hb_087992_010 Hb_127839_010--Hb_149882_010 Hb_127839_010--Hb_001863_330 Hb_127839_010--Hb_002224_020 Hb_001863_330--Hb_016333_010 Hb_001863_330--Hb_087992_010 Hb_001863_330--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_001863_330--Hb_000185_180 Hb_002224_020--Hb_149882_010 Hb_003427_030 Hb_003427_030 Hb_002224_020--Hb_003427_030 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_000185_180 Hb_149882_010--Hb_087992_010 Hb_149882_010--Hb_003427_030 Hb_149882_010--Hb_000185_180 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.71062 8.83798 0 0.0837425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117586 0 0 0.953606 2.45976

CAGE analysis