Hb_127839_010

Information

Type -
Description -
Location Contig127839: 1441-2503
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000956mg
description hypothetical protein
nr
ID XP_007203232.1
description hypothetical protein PRUPE_ppa000956mg [Prunus persica]
swissprot
ID P43298
description Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1
trembl
ID M5VTP4
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000956mg PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor protein kinase tmk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127839_010 0.0 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
2 Hb_016333_010 0.0617194443 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
3 Hb_007632_070 0.0630506627 - - kinase, putative [Ricinus communis]
4 Hb_087992_010 0.0753589381 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_149882_010 0.0776675041 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
6 Hb_001863_330 0.0794369893 - - RNA-binding region-containing protein, putative [Ricinus communis]
7 Hb_002224_020 0.0841860053 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
8 Hb_000563_470 0.0852735302 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
9 Hb_001958_010 0.0952136203 - - hypothetical protein CICLE_v100078532mg, partial [Citrus clementina]
10 Hb_001140_300 0.1000902898 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
11 Hb_032572_010 0.1025299388 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
12 Hb_005181_170 0.1056734953 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
13 Hb_000189_180 0.107139619 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
14 Hb_004037_040 0.1123595727 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_007218_040 0.1223710529 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
16 Hb_001396_030 0.1324810398 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
17 Hb_085962_010 0.1332103631 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
18 Hb_000112_080 0.1368467916 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
19 Hb_000185_180 0.1372303677 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
20 Hb_004076_060 0.1389633121 - - PREDICTED: UDP-glycosyltransferase 82A1 [Jatropha curcas]

Gene co-expression network

sample Hb_127839_010 Hb_127839_010 Hb_016333_010 Hb_016333_010 Hb_127839_010--Hb_016333_010 Hb_007632_070 Hb_007632_070 Hb_127839_010--Hb_007632_070 Hb_087992_010 Hb_087992_010 Hb_127839_010--Hb_087992_010 Hb_149882_010 Hb_149882_010 Hb_127839_010--Hb_149882_010 Hb_001863_330 Hb_001863_330 Hb_127839_010--Hb_001863_330 Hb_002224_020 Hb_002224_020 Hb_127839_010--Hb_002224_020 Hb_016333_010--Hb_001863_330 Hb_016333_010--Hb_007632_070 Hb_016333_010--Hb_087992_010 Hb_001958_010 Hb_001958_010 Hb_016333_010--Hb_001958_010 Hb_004037_040 Hb_004037_040 Hb_016333_010--Hb_004037_040 Hb_000563_470 Hb_000563_470 Hb_007632_070--Hb_000563_470 Hb_007632_070--Hb_001863_330 Hb_007632_070--Hb_087992_010 Hb_001140_300 Hb_001140_300 Hb_007632_070--Hb_001140_300 Hb_087992_010--Hb_002224_020 Hb_087992_010--Hb_001863_330 Hb_087992_010--Hb_149882_010 Hb_149882_010--Hb_002224_020 Hb_003427_030 Hb_003427_030 Hb_149882_010--Hb_003427_030 Hb_149882_010--Hb_000563_470 Hb_000185_180 Hb_000185_180 Hb_149882_010--Hb_000185_180 Hb_001863_330--Hb_002224_020 Hb_001863_330--Hb_000185_180 Hb_002224_020--Hb_003427_030 Hb_002224_020--Hb_000185_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.171161 0.254608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0359314 0.0905643

CAGE analysis