Hb_003427_030

Information

Type -
Description -
Location Contig3427: 40940-41409
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A067JXC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003427_030 0.0 - - -
2 Hb_002224_020 0.0592603954 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
3 Hb_000185_180 0.0623284932 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
4 Hb_007477_010 0.068821817 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
5 Hb_149882_010 0.0869335205 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
6 Hb_087992_010 0.0940359305 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000789_160 0.0988549905 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
8 Hb_001141_270 0.111204957 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
9 Hb_000331_630 0.1156390569 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
10 Hb_001635_140 0.1157835159 - - protein with unknown function [Ricinus communis]
11 Hb_002263_050 0.1163914294 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
12 Hb_001863_330 0.1178400116 - - RNA-binding region-containing protein, putative [Ricinus communis]
13 Hb_050898_040 0.1182687945 - - -
14 Hb_000207_060 0.1183652757 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
15 Hb_000815_010 0.1186520803 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
16 Hb_000614_300 0.1210036036 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
17 Hb_001213_060 0.1218246278 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
18 Hb_058471_020 0.1268256069 - - PREDICTED: expansin-B3-like [Jatropha curcas]
19 Hb_004933_010 0.1269264261 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
20 Hb_000563_470 0.1329482659 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]

Gene co-expression network

sample Hb_003427_030 Hb_003427_030 Hb_002224_020 Hb_002224_020 Hb_003427_030--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_000789_160 Hb_000789_160 Hb_003427_030--Hb_000789_160 Hb_002224_020--Hb_149882_010 Hb_002224_020--Hb_087992_010 Hb_002224_020--Hb_000185_180 Hb_001863_330 Hb_001863_330 Hb_002224_020--Hb_001863_330 Hb_127839_010 Hb_127839_010 Hb_002224_020--Hb_127839_010 Hb_000185_180--Hb_007477_010 Hb_000185_180--Hb_001863_330 Hb_000815_010 Hb_000815_010 Hb_000185_180--Hb_000815_010 Hb_174639_010 Hb_174639_010 Hb_000185_180--Hb_174639_010 Hb_007477_010--Hb_000815_010 Hb_001141_270 Hb_001141_270 Hb_007477_010--Hb_001141_270 Hb_007477_010--Hb_002224_020 Hb_007317_050 Hb_007317_050 Hb_007477_010--Hb_007317_050 Hb_149882_010--Hb_127839_010 Hb_149882_010--Hb_087992_010 Hb_000563_470 Hb_000563_470 Hb_149882_010--Hb_000563_470 Hb_149882_010--Hb_000185_180 Hb_087992_010--Hb_127839_010 Hb_087992_010--Hb_001863_330 Hb_016333_010 Hb_016333_010 Hb_087992_010--Hb_016333_010 Hb_007632_070 Hb_007632_070 Hb_087992_010--Hb_007632_070 Hb_000331_630 Hb_000331_630 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_000207_060 Hb_000207_060 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.11968 5.57866 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.355996 0.930168

CAGE analysis