Hb_002263_050

Information

Type -
Description -
Location Contig2263: 108613-108969
Sequence    

Annotation

kegg
ID pop:POPTR_0016s06160g
description POPTRDRAFT_576410; hypothetical protein
nr
ID XP_002323344.1
description hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
swissprot
ID P82723
description Putative defensin-like protein 128 OS=Arabidopsis thaliana GN=LCR8 PE=3 SV=2
trembl
ID B9IIC9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s06160g PE=4 SV=1
Gene Ontology
ID GO:0006952
description low-molecular-weight cysteine-rich 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002263_050 0.0 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
2 Hb_000614_300 0.0227403904 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
3 Hb_001357_110 0.0483567151 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_000331_630 0.0605377321 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
5 Hb_002308_040 0.0847425993 - - methyladenine glycosylase family protein [Populus trichocarpa]
6 Hb_002471_310 0.0906026593 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
7 Hb_000227_290 0.0936553084 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
8 Hb_005665_100 0.0958274483 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
9 Hb_001496_150 0.0967081233 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
10 Hb_018910_010 0.0973303982 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
11 Hb_153258_030 0.0993509049 - - hypothetical protein RCOM_0853150 [Ricinus communis]
12 Hb_004693_040 0.1004610206 - - -
13 Hb_000049_190 0.101104806 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_003680_240 0.1033635851 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
15 Hb_177208_010 0.1038868833 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
16 Hb_000664_010 0.1041818033 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
17 Hb_050898_040 0.1094990356 - - -
18 Hb_001568_040 0.1096546095 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000789_160 0.1099119151 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
20 Hb_005614_060 0.1106221622 - - Uncharacterized protein TCM_019750 [Theobroma cacao]

Gene co-expression network

sample Hb_002263_050 Hb_002263_050 Hb_000614_300 Hb_000614_300 Hb_002263_050--Hb_000614_300 Hb_001357_110 Hb_001357_110 Hb_002263_050--Hb_001357_110 Hb_000331_630 Hb_000331_630 Hb_002263_050--Hb_000331_630 Hb_002308_040 Hb_002308_040 Hb_002263_050--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_002263_050--Hb_002471_310 Hb_000227_290 Hb_000227_290 Hb_002263_050--Hb_000227_290 Hb_000614_300--Hb_000331_630 Hb_000614_300--Hb_001357_110 Hb_000614_300--Hb_000227_290 Hb_000614_300--Hb_002308_040 Hb_177208_010 Hb_177208_010 Hb_000614_300--Hb_177208_010 Hb_001357_110--Hb_000227_290 Hb_001357_110--Hb_002308_040 Hb_001357_110--Hb_002471_310 Hb_005665_100 Hb_005665_100 Hb_001357_110--Hb_005665_100 Hb_000789_160 Hb_000789_160 Hb_000331_630--Hb_000789_160 Hb_000331_630--Hb_001357_110 Hb_003680_240 Hb_003680_240 Hb_000331_630--Hb_003680_240 Hb_000207_060 Hb_000207_060 Hb_000331_630--Hb_000207_060 Hb_002308_040--Hb_002471_310 Hb_004693_040 Hb_004693_040 Hb_002308_040--Hb_004693_040 Hb_002308_040--Hb_005665_100 Hb_000664_010 Hb_000664_010 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_002471_310--Hb_004693_040 Hb_029584_030 Hb_029584_030 Hb_002471_310--Hb_029584_030 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_000227_290--Hb_000664_010 Hb_000227_290--Hb_029584_030 Hb_000227_290--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000227_290--Hb_005614_060 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 6.82045 33.4027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.803009 4.49826

CAGE analysis