Hb_177208_010

Information

Type transcription factor
Description TF Family: MIKC
Location Contig177208: 970-1588
Sequence    

Annotation

kegg
ID rcu:RCOM_0779180
description Floral homeotic protein DEFICIENS, putative
nr
ID AHH28315.1
description MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
swissprot
ID P23706
description Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1
trembl
ID A0A023JBQ0
description MADS-box transcription factor (Fragment) OS=Jatropha sp. CONN 198700232 PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177208_010 0.0 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
2 Hb_000227_290 0.0675109968 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
3 Hb_001357_110 0.0775905134 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
4 Hb_014834_100 0.0840519082 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
5 Hb_029584_030 0.0891434646 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
6 Hb_000664_010 0.0922554947 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
7 Hb_011224_030 0.0942040782 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
8 Hb_000614_300 0.0965615149 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
9 Hb_004225_010 0.0982194251 - - -
10 Hb_003580_020 0.0999391303 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001308_010 0.1016410436 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001557_030 0.1023501974 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
13 Hb_005653_050 0.1025945276 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
14 Hb_004440_030 0.1035401482 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
15 Hb_002263_050 0.1038868833 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
16 Hb_005665_100 0.1045568031 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
17 Hb_002471_310 0.1046623185 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_002308_040 0.1056249245 - - methyladenine glycosylase family protein [Populus trichocarpa]
19 Hb_005614_060 0.105971314 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
20 Hb_150179_010 0.1060616026 - - hypothetical protein JCGZ_21079 [Jatropha curcas]

Gene co-expression network

sample Hb_177208_010 Hb_177208_010 Hb_000227_290 Hb_000227_290 Hb_177208_010--Hb_000227_290 Hb_001357_110 Hb_001357_110 Hb_177208_010--Hb_001357_110 Hb_014834_100 Hb_014834_100 Hb_177208_010--Hb_014834_100 Hb_029584_030 Hb_029584_030 Hb_177208_010--Hb_029584_030 Hb_000664_010 Hb_000664_010 Hb_177208_010--Hb_000664_010 Hb_011224_030 Hb_011224_030 Hb_177208_010--Hb_011224_030 Hb_000227_290--Hb_001357_110 Hb_000227_290--Hb_000664_010 Hb_000227_290--Hb_029584_030 Hb_005665_100 Hb_005665_100 Hb_000227_290--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000227_290--Hb_005614_060 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150 Hb_002263_050 Hb_002263_050 Hb_001357_110--Hb_002263_050 Hb_000614_300 Hb_000614_300 Hb_001357_110--Hb_000614_300 Hb_002308_040 Hb_002308_040 Hb_001357_110--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_001357_110--Hb_002471_310 Hb_001357_110--Hb_005665_100 Hb_001557_030 Hb_001557_030 Hb_014834_100--Hb_001557_030 Hb_103468_010 Hb_103468_010 Hb_014834_100--Hb_103468_010 Hb_014834_100--Hb_011224_030 Hb_001433_230 Hb_001433_230 Hb_014834_100--Hb_001433_230 Hb_150179_010 Hb_150179_010 Hb_014834_100--Hb_150179_010 Hb_002073_210 Hb_002073_210 Hb_014834_100--Hb_002073_210 Hb_029584_030--Hb_000664_010 Hb_029584_030--Hb_150179_010 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_011224_030 Hb_029584_030--Hb_002471_310 Hb_000664_010--Hb_005665_100 Hb_000664_010--Hb_002471_310 Hb_000664_010--Hb_011224_030 Hb_000664_010--Hb_002308_040 Hb_000664_010--Hb_150179_010 Hb_011224_030--Hb_150179_010 Hb_011224_030--Hb_002471_310 Hb_011224_030--Hb_002308_040 Hb_007007_140 Hb_007007_140 Hb_011224_030--Hb_007007_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.110877 4.55798 32.1428 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.229419 0 0.31073 5.98959

CAGE analysis