Hb_001357_110

Information

Type -
Description -
Location Contig1357: 82409-84578
Sequence    

Annotation

kegg
ID rcu:RCOM_0753090
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002529469.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID O48766
description Endoglucanase 11 OS=Arabidopsis thaliana GN=At2g32990 PE=2 SV=1
trembl
ID B9SU00
description Endo-1,4-beta-glucanase, putative OS=Ricinus communis GN=RCOM_0753090 PE=4 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09916: 82494-82907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_110 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_002263_050 0.0483567151 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
3 Hb_000614_300 0.0510627889 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
4 Hb_000227_290 0.0551843955 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
5 Hb_002308_040 0.0584054377 - - methyladenine glycosylase family protein [Populus trichocarpa]
6 Hb_002471_310 0.0618146034 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
7 Hb_005665_100 0.0621122585 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
8 Hb_000664_010 0.0645430053 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
9 Hb_029584_030 0.0697974366 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
10 Hb_005614_060 0.0746207199 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
11 Hb_177208_010 0.0775905134 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
12 Hb_018910_010 0.0786499586 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
13 Hb_000049_190 0.0793508333 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_001496_150 0.0817736732 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
15 Hb_000331_630 0.0851326879 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
16 Hb_004693_040 0.0856665423 - - -
17 Hb_011224_030 0.0864568294 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_001557_030 0.0911765518 - - hypothetical protein CICLE_v10005306mg [Citrus clementina]
19 Hb_150179_010 0.0932693445 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
20 Hb_004440_030 0.0940733977 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]

Gene co-expression network

sample Hb_001357_110 Hb_001357_110 Hb_002263_050 Hb_002263_050 Hb_001357_110--Hb_002263_050 Hb_000614_300 Hb_000614_300 Hb_001357_110--Hb_000614_300 Hb_000227_290 Hb_000227_290 Hb_001357_110--Hb_000227_290 Hb_002308_040 Hb_002308_040 Hb_001357_110--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_001357_110--Hb_002471_310 Hb_005665_100 Hb_005665_100 Hb_001357_110--Hb_005665_100 Hb_002263_050--Hb_000614_300 Hb_000331_630 Hb_000331_630 Hb_002263_050--Hb_000331_630 Hb_002263_050--Hb_002308_040 Hb_002263_050--Hb_002471_310 Hb_002263_050--Hb_000227_290 Hb_000614_300--Hb_000331_630 Hb_000614_300--Hb_000227_290 Hb_000614_300--Hb_002308_040 Hb_177208_010 Hb_177208_010 Hb_000614_300--Hb_177208_010 Hb_000664_010 Hb_000664_010 Hb_000227_290--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_000227_290--Hb_029584_030 Hb_000227_290--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000227_290--Hb_005614_060 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150 Hb_002308_040--Hb_002471_310 Hb_004693_040 Hb_004693_040 Hb_002308_040--Hb_004693_040 Hb_002308_040--Hb_005665_100 Hb_002308_040--Hb_000664_010 Hb_018910_010 Hb_018910_010 Hb_002308_040--Hb_018910_010 Hb_007007_140 Hb_007007_140 Hb_002308_040--Hb_007007_140 Hb_002471_310--Hb_005665_100 Hb_002471_310--Hb_000664_010 Hb_002471_310--Hb_004693_040 Hb_002471_310--Hb_029584_030 Hb_024066_020 Hb_024066_020 Hb_002471_310--Hb_024066_020 Hb_005665_100--Hb_000664_010 Hb_005665_100--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_005665_100--Hb_000049_190 Hb_005665_100--Hb_005614_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166471 0.907538 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00902884 0.142504

CAGE analysis