Hb_000331_630

Information

Type -
Description -
Location Contig331: 491847-493239
Sequence    

Annotation

kegg
ID tcc:TCM_014530
description Pectate lyase family protein isoform 3
nr
ID KJB51151.1
description hypothetical protein B456_008G203900 [Gossypium raimondii]
swissprot
ID Q93Z25
description Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1
trembl
ID A0A0D2T9H6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G203900 PE=4 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_630 0.0 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
2 Hb_000614_300 0.0497039629 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
3 Hb_002263_050 0.0605377321 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
4 Hb_000789_160 0.0688165598 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
5 Hb_001357_110 0.0851326879 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_003680_240 0.0872770589 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
7 Hb_000207_060 0.0972336118 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
8 Hb_177208_010 0.1061402509 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
9 Hb_000227_290 0.1062272628 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
10 Hb_001496_150 0.1151383448 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
11 Hb_050898_040 0.1152076821 - - -
12 Hb_003427_030 0.1156390569 - - -
13 Hb_058471_020 0.1221257861 - - PREDICTED: expansin-B3-like [Jatropha curcas]
14 Hb_000408_060 0.1242224594 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
15 Hb_002014_130 0.1242289341 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005144_150 0.1249932971 - - hypothetical protein VITISV_013572 [Vitis vinifera]
17 Hb_002471_310 0.1261552183 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
18 Hb_153258_030 0.1269425895 - - hypothetical protein RCOM_0853150 [Ricinus communis]
19 Hb_002308_040 0.1269542027 - - methyladenine glycosylase family protein [Populus trichocarpa]
20 Hb_014834_100 0.1288987394 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]

Gene co-expression network

sample Hb_000331_630 Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000331_630--Hb_000614_300 Hb_002263_050 Hb_002263_050 Hb_000331_630--Hb_002263_050 Hb_000789_160 Hb_000789_160 Hb_000331_630--Hb_000789_160 Hb_001357_110 Hb_001357_110 Hb_000331_630--Hb_001357_110 Hb_003680_240 Hb_003680_240 Hb_000331_630--Hb_003680_240 Hb_000207_060 Hb_000207_060 Hb_000331_630--Hb_000207_060 Hb_000614_300--Hb_002263_050 Hb_000614_300--Hb_001357_110 Hb_000227_290 Hb_000227_290 Hb_000614_300--Hb_000227_290 Hb_002308_040 Hb_002308_040 Hb_000614_300--Hb_002308_040 Hb_177208_010 Hb_177208_010 Hb_000614_300--Hb_177208_010 Hb_002263_050--Hb_001357_110 Hb_002263_050--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_002263_050--Hb_002471_310 Hb_002263_050--Hb_000227_290 Hb_000789_160--Hb_000614_300 Hb_003427_030 Hb_003427_030 Hb_000789_160--Hb_003427_030 Hb_000789_160--Hb_000207_060 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170 Hb_001357_110--Hb_000227_290 Hb_001357_110--Hb_002308_040 Hb_001357_110--Hb_002471_310 Hb_005665_100 Hb_005665_100 Hb_001357_110--Hb_005665_100 Hb_002686_220 Hb_002686_220 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_006153_140 Hb_006153_140 Hb_003680_240--Hb_006153_140 Hb_140627_040 Hb_140627_040 Hb_003680_240--Hb_140627_040 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_004705_060 Hb_004705_060 Hb_000207_060--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_000207_060--Hb_009367_070 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.313831 17.0289 85.5902 0.0185416 0.0945126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.58401 14.0743

CAGE analysis