Hb_140627_040

Information

Type -
Description -
Location Contig140627: 38465-41898
Sequence    

Annotation

kegg
ID rcu:RCOM_1176540
description structural molecule, putative
nr
ID XP_012088361.1
description PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
swissprot
ID Q8VYN2
description Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1
trembl
ID A0A067JJP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25853 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 4-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11007: 38497-41826
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140627_040 0.0 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
2 Hb_034713_010 0.0815844285 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
3 Hb_003680_240 0.0877815733 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
4 Hb_009367_070 0.088040341 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
5 Hb_051212_020 0.0959375054 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
6 Hb_000207_060 0.1014081809 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
7 Hb_009062_020 0.1028788785 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
8 Hb_009662_040 0.1039438556 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
9 Hb_135757_030 0.1050153502 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
10 Hb_000413_120 0.1059771525 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
11 Hb_090210_010 0.1072745686 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
12 Hb_001818_010 0.1081829065 - - Disease resistance response protein, putative [Ricinus communis]
13 Hb_153258_030 0.1117893499 - - hypothetical protein RCOM_0853150 [Ricinus communis]
14 Hb_016911_010 0.1127393846 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
15 Hb_002809_040 0.1130466715 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002228_120 0.113664836 - - potassium channel beta, putative [Ricinus communis]
17 Hb_003090_220 0.1149464368 - - PREDICTED: copper transporter 4 [Jatropha curcas]
18 Hb_015978_020 0.115155062 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
19 Hb_015292_020 0.1187540732 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_001898_030 0.1193606748 - - protein kinase-coding resistance protein [Nicotiana repanda]

Gene co-expression network

sample Hb_140627_040 Hb_140627_040 Hb_034713_010 Hb_034713_010 Hb_140627_040--Hb_034713_010 Hb_003680_240 Hb_003680_240 Hb_140627_040--Hb_003680_240 Hb_009367_070 Hb_009367_070 Hb_140627_040--Hb_009367_070 Hb_051212_020 Hb_051212_020 Hb_140627_040--Hb_051212_020 Hb_000207_060 Hb_000207_060 Hb_140627_040--Hb_000207_060 Hb_009062_020 Hb_009062_020 Hb_140627_040--Hb_009062_020 Hb_034713_010--Hb_009367_070 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_004705_060 Hb_004705_060 Hb_034713_010--Hb_004705_060 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030 Hb_004112_080 Hb_004112_080 Hb_034713_010--Hb_004112_080 Hb_002686_220 Hb_002686_220 Hb_003680_240--Hb_002686_220 Hb_003598_050 Hb_003598_050 Hb_003680_240--Hb_003598_050 Hb_006153_140 Hb_006153_140 Hb_003680_240--Hb_006153_140 Hb_000331_630 Hb_000331_630 Hb_003680_240--Hb_000331_630 Hb_017061_010 Hb_017061_010 Hb_003680_240--Hb_017061_010 Hb_009367_070--Hb_004705_060 Hb_009367_070--Hb_004112_080 Hb_011628_010 Hb_011628_010 Hb_009367_070--Hb_011628_010 Hb_009367_070--Hb_000207_060 Hb_001818_010 Hb_001818_010 Hb_051212_020--Hb_001818_010 Hb_016911_010 Hb_016911_010 Hb_051212_020--Hb_016911_010 Hb_051212_020--Hb_002686_220 Hb_009079_020 Hb_009079_020 Hb_051212_020--Hb_009079_020 Hb_000934_120 Hb_000934_120 Hb_051212_020--Hb_000934_120 Hb_002260_140 Hb_002260_140 Hb_051212_020--Hb_002260_140 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_000207_060--Hb_001818_010 Hb_000207_060--Hb_004705_060 Hb_000207_060--Hb_000331_630 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060 Hb_009062_020--Hb_016911_010 Hb_001136_080 Hb_001136_080 Hb_009062_020--Hb_001136_080 Hb_001775_140 Hb_001775_140 Hb_009062_020--Hb_001775_140 Hb_009062_020--Hb_000934_120 Hb_015292_020 Hb_015292_020 Hb_009062_020--Hb_015292_020 Hb_009062_020--Hb_051212_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.529122 1.45613 12.0567 50.0486 0.347235 0.135079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.01489 5.09625

CAGE analysis