Hb_004705_060

Information

Type -
Description -
Location Contig4705: 91281-94138
Sequence    

Annotation

kegg
ID rcu:RCOM_1438140
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_012088729.1
description PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID A0A067JHE8
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_23105 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44231: 91239-94254 , PASA_asmbl_44232: 92332-94254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004705_060 0.0 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
2 Hb_009367_070 0.0757677058 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
3 Hb_085829_010 0.0805706707 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
4 Hb_000333_140 0.0860240823 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
5 Hb_004112_080 0.0900936981 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
6 Hb_000207_060 0.0906006177 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
7 Hb_034713_010 0.0946269236 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
8 Hb_000017_250 0.0971079659 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
9 Hb_003090_220 0.0979428744 - - PREDICTED: copper transporter 4 [Jatropha curcas]
10 Hb_001635_140 0.0996866048 - - protein with unknown function [Ricinus communis]
11 Hb_011628_010 0.0997529751 - - tonoplast intrinsic protein, putative [Ricinus communis]
12 Hb_030360_010 0.1026680903 - - -
13 Hb_000334_090 0.1032650789 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
14 Hb_000813_020 0.1043623246 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
15 Hb_015292_020 0.1108911919 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_039075_010 0.1113159409 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_001141_440 0.1132444015 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
18 Hb_002304_110 0.1152954592 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
19 Hb_170077_020 0.1165462356 - - PREDICTED: probable serine incorporator [Jatropha curcas]
20 Hb_000853_250 0.1169795637 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_004705_060 Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_004705_060--Hb_009367_070 Hb_085829_010 Hb_085829_010 Hb_004705_060--Hb_085829_010 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004112_080 Hb_004112_080 Hb_004705_060--Hb_004112_080 Hb_000207_060 Hb_000207_060 Hb_004705_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_004705_060--Hb_034713_010 Hb_009367_070--Hb_034713_010 Hb_009367_070--Hb_004112_080 Hb_140627_040 Hb_140627_040 Hb_009367_070--Hb_140627_040 Hb_011628_010 Hb_011628_010 Hb_009367_070--Hb_011628_010 Hb_009367_070--Hb_000207_060 Hb_000086_510 Hb_000086_510 Hb_085829_010--Hb_000086_510 Hb_000334_090 Hb_000334_090 Hb_085829_010--Hb_000334_090 Hb_000017_250 Hb_000017_250 Hb_085829_010--Hb_000017_250 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000333_140--Hb_011628_010 Hb_005211_170 Hb_005211_170 Hb_000333_140--Hb_005211_170 Hb_001136_080 Hb_001136_080 Hb_000333_140--Hb_001136_080 Hb_015292_020 Hb_015292_020 Hb_000333_140--Hb_015292_020 Hb_002307_150 Hb_002307_150 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040 Hb_030360_010 Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_039075_010 Hb_039075_010 Hb_004112_080--Hb_039075_010 Hb_004112_080--Hb_011628_010 Hb_004112_080--Hb_034713_010 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_000331_630 Hb_000331_630 Hb_000207_060--Hb_000331_630 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284333 1.13399 7.44424 22.0715 0.123556 0.0286503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0509754 0 1.64887 2.12997

CAGE analysis