Hb_085829_010

Information

Type -
Description -
Location Contig85829: 7552-8373
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04710g
description hypothetical protein
nr
ID XP_012088218.1
description PREDICTED: homeobox protein 2-like [Jatropha curcas]
swissprot
ID Q01197
description Protein E6 OS=Gossypium hirsutum GN=E6 PE=2 SV=1
trembl
ID A0A067JMM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60667: 7503-8427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085829_010 0.0 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
2 Hb_000086_510 0.0669896734 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
3 Hb_004705_060 0.0805706707 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_000334_090 0.0876880615 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
5 Hb_000017_250 0.0992996879 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
6 Hb_001213_060 0.1063082614 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
7 Hb_000853_250 0.1078164019 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
8 Hb_000243_340 0.1135001873 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
9 Hb_000506_050 0.1139185819 - - PREDICTED: thymidine kinase [Jatropha curcas]
10 Hb_001141_440 0.1148389118 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
11 Hb_034713_010 0.1152340223 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
12 Hb_009367_070 0.118458156 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
13 Hb_000157_020 0.1188178681 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000162_190 0.1188374048 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
15 Hb_000890_120 0.119863077 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
16 Hb_000062_280 0.1230528107 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
17 Hb_002304_110 0.1246291533 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
18 Hb_165110_010 0.1251036242 - - PREDICTED: kunitz-type elastase inhibitor BrEI-like [Jatropha curcas]
19 Hb_000568_020 0.1253263146 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
20 Hb_000813_020 0.1312733381 - - PREDICTED: metacaspase-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_085829_010 Hb_085829_010 Hb_000086_510 Hb_000086_510 Hb_085829_010--Hb_000086_510 Hb_004705_060 Hb_004705_060 Hb_085829_010--Hb_004705_060 Hb_000334_090 Hb_000334_090 Hb_085829_010--Hb_000334_090 Hb_000017_250 Hb_000017_250 Hb_085829_010--Hb_000017_250 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_000853_250 Hb_000853_250 Hb_085829_010--Hb_000853_250 Hb_000086_510--Hb_000334_090 Hb_165110_010 Hb_165110_010 Hb_000086_510--Hb_165110_010 Hb_000320_240 Hb_000320_240 Hb_000086_510--Hb_000320_240 Hb_000157_020 Hb_000157_020 Hb_000086_510--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_000086_510--Hb_000243_340 Hb_009367_070 Hb_009367_070 Hb_004705_060--Hb_009367_070 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004112_080 Hb_004112_080 Hb_004705_060--Hb_004112_080 Hb_000207_060 Hb_000207_060 Hb_004705_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_004705_060--Hb_034713_010 Hb_000813_020 Hb_000813_020 Hb_000334_090--Hb_000813_020 Hb_170077_020 Hb_170077_020 Hb_000334_090--Hb_170077_020 Hb_002304_110 Hb_002304_110 Hb_000334_090--Hb_002304_110 Hb_000352_360 Hb_000352_360 Hb_000334_090--Hb_000352_360 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_000017_250--Hb_004705_060 Hb_000017_250--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020 Hb_001213_060--Hb_000334_090 Hb_003427_030 Hb_003427_030 Hb_001213_060--Hb_003427_030 Hb_000789_160 Hb_000789_160 Hb_001213_060--Hb_000789_160 Hb_001213_060--Hb_000207_060 Hb_001213_060--Hb_034713_010 Hb_001141_440 Hb_001141_440 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000853_250--Hb_000162_190 Hb_000853_250--Hb_025787_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.503097 2.58682 21.9029 71.2876 0.460859 0.219247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0511981 0 9.37891 5.46149

CAGE analysis