Hb_000017_250

Information

Type -
Description -
Location Contig17: 322947-323441
Sequence    

Annotation

kegg
ID rcu:RCOM_1687660
description zinc finger protein, putative
nr
ID XP_012086847.1
description PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
swissprot
ID Q9SUS5
description E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1
trembl
ID A0A067JRF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20559 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rha1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_250 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
2 Hb_002701_030 0.0863431445 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_004705_060 0.0971079659 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_085829_010 0.0992996879 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
5 Hb_000853_250 0.1057664795 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
6 Hb_000162_190 0.1101878463 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_025787_020 0.1109715618 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
8 Hb_001635_140 0.1123779298 - - protein with unknown function [Ricinus communis]
9 Hb_000334_090 0.1199079816 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
10 Hb_000093_090 0.1256738926 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
11 Hb_000207_060 0.1271243328 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
12 Hb_001141_440 0.1283086349 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
13 Hb_003893_180 0.1331042651 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
14 Hb_005253_020 0.1331353102 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
15 Hb_003090_220 0.1332510576 - - PREDICTED: copper transporter 4 [Jatropha curcas]
16 Hb_001213_060 0.1341625915 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
17 Hb_000462_070 0.1347630346 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
18 Hb_000506_050 0.1369035742 - - PREDICTED: thymidine kinase [Jatropha curcas]
19 Hb_000568_020 0.136909369 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
20 Hb_000003_110 0.1377811694 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000017_250 Hb_000017_250 Hb_002701_030 Hb_002701_030 Hb_000017_250--Hb_002701_030 Hb_004705_060 Hb_004705_060 Hb_000017_250--Hb_004705_060 Hb_085829_010 Hb_085829_010 Hb_000017_250--Hb_085829_010 Hb_000853_250 Hb_000853_250 Hb_000017_250--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020 Hb_005648_020 Hb_005648_020 Hb_002701_030--Hb_005648_020 Hb_003849_170 Hb_003849_170 Hb_002701_030--Hb_003849_170 Hb_002600_120 Hb_002600_120 Hb_002701_030--Hb_002600_120 Hb_004531_160 Hb_004531_160 Hb_002701_030--Hb_004531_160 Hb_000997_080 Hb_000997_080 Hb_002701_030--Hb_000997_080 Hb_009367_070 Hb_009367_070 Hb_004705_060--Hb_009367_070 Hb_004705_060--Hb_085829_010 Hb_000333_140 Hb_000333_140 Hb_004705_060--Hb_000333_140 Hb_004112_080 Hb_004112_080 Hb_004705_060--Hb_004112_080 Hb_000207_060 Hb_000207_060 Hb_004705_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_004705_060--Hb_034713_010 Hb_000086_510 Hb_000086_510 Hb_085829_010--Hb_000086_510 Hb_000334_090 Hb_000334_090 Hb_085829_010--Hb_000334_090 Hb_001213_060 Hb_001213_060 Hb_085829_010--Hb_001213_060 Hb_085829_010--Hb_000853_250 Hb_001141_440 Hb_001141_440 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000853_250--Hb_000162_190 Hb_000853_250--Hb_025787_020 Hb_003935_040 Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_025787_020--Hb_009252_080 Hb_001140_300 Hb_001140_300 Hb_025787_020--Hb_001140_300 Hb_001056_040 Hb_001056_040 Hb_025787_020--Hb_001056_040 Hb_000345_230 Hb_000345_230 Hb_025787_020--Hb_000345_230 Hb_001709_090 Hb_001709_090 Hb_025787_020--Hb_001709_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149312 2.98464 28.9214 83.0786 0.50113 0.377221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136454 1.39357 0 11.1515 12.1969

CAGE analysis