Hb_001709_090

Information

Type -
Description -
Location Contig1709: 192377-193375
Sequence    

Annotation

kegg
ID rcu:RCOM_1313670
description electron transporter, putative
nr
ID XP_012086623.1
description PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID A0A067JMZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20373 PE=4 SV=1
Gene Ontology
ID GO:0009055
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15968: 192794-193140
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001709_090 0.0 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
2 Hb_009252_080 0.0616645712 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
3 Hb_043552_010 0.079314855 - - PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B isoform X1 [Jatropha curcas]
4 Hb_000375_260 0.0811265609 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
5 Hb_001056_040 0.0834325428 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
6 Hb_000345_230 0.0894587134 - - -
7 Hb_002028_270 0.0961814044 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_025787_020 0.0964561072 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
9 Hb_000359_100 0.1016062764 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001159_090 0.1039092817 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
11 Hb_001971_040 0.1059939871 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
12 Hb_005211_170 0.1072629089 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
13 Hb_003935_040 0.1078352015 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
14 Hb_050898_030 0.1082967511 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000333_140 0.1100323425 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_001141_440 0.110601771 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
17 Hb_000020_050 0.1111316021 - - PREDICTED: expansin-A6 [Jatropha curcas]
18 Hb_000878_080 0.1112462772 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
19 Hb_002307_150 0.1112596643 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
20 Hb_003750_120 0.1119518442 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]

Gene co-expression network

sample Hb_001709_090 Hb_001709_090 Hb_009252_080 Hb_009252_080 Hb_001709_090--Hb_009252_080 Hb_043552_010 Hb_043552_010 Hb_001709_090--Hb_043552_010 Hb_000375_260 Hb_000375_260 Hb_001709_090--Hb_000375_260 Hb_001056_040 Hb_001056_040 Hb_001709_090--Hb_001056_040 Hb_000345_230 Hb_000345_230 Hb_001709_090--Hb_000345_230 Hb_002028_270 Hb_002028_270 Hb_001709_090--Hb_002028_270 Hb_009252_080--Hb_043552_010 Hb_025787_020 Hb_025787_020 Hb_009252_080--Hb_025787_020 Hb_009252_080--Hb_001056_040 Hb_000162_190 Hb_000162_190 Hb_009252_080--Hb_000162_190 Hb_009252_080--Hb_000345_230 Hb_043552_010--Hb_000375_260 Hb_043552_010--Hb_000162_190 Hb_000310_040 Hb_000310_040 Hb_043552_010--Hb_000310_040 Hb_003992_020 Hb_003992_020 Hb_043552_010--Hb_003992_020 Hb_001159_090 Hb_001159_090 Hb_000375_260--Hb_001159_090 Hb_006120_130 Hb_006120_130 Hb_000375_260--Hb_006120_130 Hb_000375_260--Hb_002028_270 Hb_000375_260--Hb_003992_020 Hb_001140_300 Hb_001140_300 Hb_001056_040--Hb_001140_300 Hb_174639_010 Hb_174639_010 Hb_001056_040--Hb_174639_010 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001709_120 Hb_001709_120 Hb_001056_040--Hb_001709_120 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_003935_040 Hb_003935_040 Hb_000345_230--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000345_230--Hb_001141_440 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_000878_080 Hb_000878_080 Hb_002028_270--Hb_000878_080 Hb_000359_100 Hb_000359_100 Hb_002028_270--Hb_000359_100 Hb_004005_060 Hb_004005_060 Hb_002028_270--Hb_004005_060 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133012 0.906986 1.38712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.128388 0.244898

CAGE analysis