Hb_174639_010

Information

Type -
Description -
Location Contig174639: 307-1569
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ZNQ8
description Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16625: 163-333 , PASA_asmbl_16626: 373-843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174639_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001007_020 0.0770151602 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
3 Hb_001856_210 0.0785799047 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
4 Hb_001709_120 0.0801661821 - - hypothetical protein RCOM_1313640 [Ricinus communis]
5 Hb_001056_040 0.0802966552 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
6 Hb_001863_330 0.0881339543 - - RNA-binding region-containing protein, putative [Ricinus communis]
7 Hb_000320_010 0.0906806813 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000185_180 0.1017860548 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
9 Hb_003894_110 0.1025530815 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
10 Hb_001025_130 0.1038070679 - - PREDICTED: uncharacterized protein LOC105640342 [Jatropha curcas]
11 Hb_002902_060 0.1040692499 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
12 Hb_002894_060 0.1046651002 - - respiratory burst oxidase D [Manihot esculenta]
13 Hb_000363_390 0.1059342569 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
14 Hb_001140_300 0.1065605029 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
15 Hb_001047_090 0.1070384102 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
16 Hb_040852_010 0.1111296055 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000028_080 0.1119658818 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
18 Hb_000418_110 0.1122391924 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
19 Hb_000134_130 0.1128884529 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
20 Hb_000373_020 0.115354162 - - PREDICTED: beta-adaptin-like protein A [Jatropha curcas]

Gene co-expression network

sample Hb_174639_010 Hb_174639_010 Hb_001007_020 Hb_001007_020 Hb_174639_010--Hb_001007_020 Hb_001856_210 Hb_001856_210 Hb_174639_010--Hb_001856_210 Hb_001709_120 Hb_001709_120 Hb_174639_010--Hb_001709_120 Hb_001056_040 Hb_001056_040 Hb_174639_010--Hb_001056_040 Hb_001863_330 Hb_001863_330 Hb_174639_010--Hb_001863_330 Hb_000320_010 Hb_000320_010 Hb_174639_010--Hb_000320_010 Hb_000418_110 Hb_000418_110 Hb_001007_020--Hb_000418_110 Hb_002894_060 Hb_002894_060 Hb_001007_020--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_001007_020--Hb_000134_130 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001349_050 Hb_001349_050 Hb_001007_020--Hb_001349_050 Hb_000445_260 Hb_000445_260 Hb_001856_210--Hb_000445_260 Hb_010080_050 Hb_010080_050 Hb_001856_210--Hb_010080_050 Hb_000878_080 Hb_000878_080 Hb_001856_210--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_001856_210--Hb_004880_040 Hb_009113_020 Hb_009113_020 Hb_001856_210--Hb_009113_020 Hb_001025_130 Hb_001025_130 Hb_001709_120--Hb_001025_130 Hb_015292_020 Hb_015292_020 Hb_001709_120--Hb_015292_020 Hb_002902_060 Hb_002902_060 Hb_001709_120--Hb_002902_060 Hb_001709_120--Hb_001056_040 Hb_006483_070 Hb_006483_070 Hb_001709_120--Hb_006483_070 Hb_001140_300 Hb_001140_300 Hb_001056_040--Hb_001140_300 Hb_009252_080 Hb_009252_080 Hb_001056_040--Hb_009252_080 Hb_002045_210 Hb_002045_210 Hb_001056_040--Hb_002045_210 Hb_001709_090 Hb_001709_090 Hb_001056_040--Hb_001709_090 Hb_016333_010 Hb_016333_010 Hb_001863_330--Hb_016333_010 Hb_087992_010 Hb_087992_010 Hb_001863_330--Hb_087992_010 Hb_127839_010 Hb_127839_010 Hb_001863_330--Hb_127839_010 Hb_007632_070 Hb_007632_070 Hb_001863_330--Hb_007632_070 Hb_002224_020 Hb_002224_020 Hb_001863_330--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_001863_330--Hb_000185_180 Hb_000320_010--Hb_000134_130 Hb_040852_010 Hb_040852_010 Hb_000320_010--Hb_040852_010 Hb_000320_010--Hb_001007_020 Hb_000320_010--Hb_003894_110 Hb_003376_020 Hb_003376_020 Hb_000320_010--Hb_003376_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.485364 15.885 22.9608 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.857632 5.09026

CAGE analysis