Hb_000418_110

Information

Type -
Description -
Location Contig418: 123409-125466
Sequence    

Annotation

kegg
ID rcu:RCOM_1091380
description serine/threonine protein kinase, putative (EC:2.7.11.13)
nr
ID XP_012075668.1
description PREDICTED: protein kinase PINOID [Jatropha curcas]
swissprot
ID O64682
description Protein kinase PINOID OS=Arabidopsis thaliana GN=PID PE=1 SV=1
trembl
ID A0A067KIX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09256 PE=4 SV=1
Gene Ontology
ID GO:0009986
description protein kinase pinoid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41326: 123555-123884 , PASA_asmbl_41328: 125364-125694 , PASA_asmbl_41329: 125509-125770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000418_110 0.0 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
2 Hb_001007_020 0.0463951459 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
3 Hb_002894_060 0.0583215858 - - respiratory burst oxidase D [Manihot esculenta]
4 Hb_000134_130 0.0784041882 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
5 Hb_019516_010 0.0794700689 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
6 Hb_007632_160 0.0801807556 - - conserved hypothetical protein [Ricinus communis]
7 Hb_098315_060 0.0820644505 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
8 Hb_001349_050 0.0844473287 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
9 Hb_007218_040 0.0846922025 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
10 Hb_003894_110 0.0877127002 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
11 Hb_003750_120 0.092708258 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
12 Hb_152910_050 0.0946962541 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_040852_010 0.0953863338 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000009_270 0.095505099 - - Calmodulin, putative [Ricinus communis]
15 Hb_015048_020 0.0977237158 - - PREDICTED: myb-like protein D [Jatropha curcas]
16 Hb_000359_100 0.100241132 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002609_120 0.1005751249 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
18 Hb_005276_190 0.1007521786 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
19 Hb_001157_050 0.1011083072 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
20 Hb_005181_170 0.1012041305 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]

Gene co-expression network

sample Hb_000418_110 Hb_000418_110 Hb_001007_020 Hb_001007_020 Hb_000418_110--Hb_001007_020 Hb_002894_060 Hb_002894_060 Hb_000418_110--Hb_002894_060 Hb_000134_130 Hb_000134_130 Hb_000418_110--Hb_000134_130 Hb_019516_010 Hb_019516_010 Hb_000418_110--Hb_019516_010 Hb_007632_160 Hb_007632_160 Hb_000418_110--Hb_007632_160 Hb_098315_060 Hb_098315_060 Hb_000418_110--Hb_098315_060 Hb_001007_020--Hb_002894_060 Hb_001007_020--Hb_000134_130 Hb_174639_010 Hb_174639_010 Hb_001007_020--Hb_174639_010 Hb_003894_110 Hb_003894_110 Hb_001007_020--Hb_003894_110 Hb_001349_050 Hb_001349_050 Hb_001007_020--Hb_001349_050 Hb_002894_060--Hb_001349_050 Hb_002894_060--Hb_019516_010 Hb_002894_060--Hb_000134_130 Hb_001623_250 Hb_001623_250 Hb_002894_060--Hb_001623_250 Hb_152910_050 Hb_152910_050 Hb_000134_130--Hb_152910_050 Hb_000134_130--Hb_098315_060 Hb_040852_010 Hb_040852_010 Hb_000134_130--Hb_040852_010 Hb_000134_130--Hb_003894_110 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_003376_020 Hb_003376_020 Hb_000134_130--Hb_003376_020 Hb_007221_020 Hb_007221_020 Hb_019516_010--Hb_007221_020 Hb_019516_010--Hb_000134_130 Hb_031321_020 Hb_031321_020 Hb_019516_010--Hb_031321_020 Hb_001958_040 Hb_001958_040 Hb_019516_010--Hb_001958_040 Hb_004007_050 Hb_004007_050 Hb_019516_010--Hb_004007_050 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000120_340 Hb_000120_340 Hb_007632_160--Hb_000120_340 Hb_000086_470 Hb_000086_470 Hb_007632_160--Hb_000086_470 Hb_004122_010 Hb_004122_010 Hb_007632_160--Hb_004122_010 Hb_005675_050 Hb_005675_050 Hb_007632_160--Hb_005675_050 Hb_098315_060--Hb_152910_050 Hb_098315_060--Hb_040852_010 Hb_098315_060--Hb_003894_110 Hb_017434_010 Hb_017434_010 Hb_098315_060--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_098315_060--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0148617 0.571933 8.83847 8.40294 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.564458 3.27986

CAGE analysis