Hb_000120_340

Information

Type -
Description -
Location Contig120: 236403-240487
Sequence    

Annotation

kegg
ID rcu:RCOM_0613710
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002528535.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID Q9ZSP5
description Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1
trembl
ID B9SRB6
description Cucumisin, putative OS=Ricinus communis GN=RCOM_0613710 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06113: 236224-238179 , PASA_asmbl_06114: 238184-240136
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_340 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_003666_070 0.0695598077 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
3 Hb_000086_470 0.0704013781 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
4 Hb_019973_010 0.0766117928 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
5 Hb_007632_160 0.0830024468 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011671_050 0.08791752 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
7 Hb_007237_020 0.0879463165 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
8 Hb_001157_050 0.0954896674 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
9 Hb_004115_010 0.0959508673 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
10 Hb_121313_010 0.0971416778 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
11 Hb_002518_040 0.097774479 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_128196_010 0.0981881728 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002301_400 0.1007622562 - - structural constituent of cell wall, putative [Ricinus communis]
14 Hb_001269_060 0.105346563 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
15 Hb_000627_040 0.1070648266 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_005675_050 0.1096060244 - - alpha-glucosidase, putative [Ricinus communis]
17 Hb_005276_190 0.1103163772 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
18 Hb_003207_120 0.1103740179 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
19 Hb_000349_250 0.1116839322 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
20 Hb_070498_010 0.1124191083 - - receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_340 Hb_000120_340 Hb_003666_070 Hb_003666_070 Hb_000120_340--Hb_003666_070 Hb_000086_470 Hb_000086_470 Hb_000120_340--Hb_000086_470 Hb_019973_010 Hb_019973_010 Hb_000120_340--Hb_019973_010 Hb_007632_160 Hb_007632_160 Hb_000120_340--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_000120_340--Hb_011671_050 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_005675_050 Hb_005675_050 Hb_003666_070--Hb_005675_050 Hb_168918_010 Hb_168918_010 Hb_003666_070--Hb_168918_010 Hb_004592_010 Hb_004592_010 Hb_003666_070--Hb_004592_010 Hb_003666_070--Hb_007632_160 Hb_003666_070--Hb_011671_050 Hb_000086_470--Hb_007237_020 Hb_004202_030 Hb_004202_030 Hb_000086_470--Hb_004202_030 Hb_007313_030 Hb_007313_030 Hb_000086_470--Hb_007313_030 Hb_000086_470--Hb_007632_160 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_004115_010 Hb_004115_010 Hb_019973_010--Hb_004115_010 Hb_019973_010--Hb_000086_470 Hb_000349_250 Hb_000349_250 Hb_019973_010--Hb_000349_250 Hb_019973_010--Hb_004202_030 Hb_003207_120 Hb_003207_120 Hb_019973_010--Hb_003207_120 Hb_001157_050 Hb_001157_050 Hb_007632_160--Hb_001157_050 Hb_000418_110 Hb_000418_110 Hb_007632_160--Hb_000418_110 Hb_004122_010 Hb_004122_010 Hb_007632_160--Hb_004122_010 Hb_007632_160--Hb_005675_050 Hb_002518_040 Hb_002518_040 Hb_011671_050--Hb_002518_040 Hb_001439_050 Hb_001439_050 Hb_011671_050--Hb_001439_050 Hb_001511_210 Hb_001511_210 Hb_011671_050--Hb_001511_210 Hb_011671_050--Hb_007632_160 Hb_007237_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_007237_020--Hb_002053_180 Hb_002490_060 Hb_002490_060 Hb_007237_020--Hb_002490_060 Hb_002817_030 Hb_002817_030 Hb_007237_020--Hb_002817_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334954 2.64649 24.8904 16.5205 0.105728 0.0540468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0773872 0.0487176 0.0232737 2.23259 8.82504

CAGE analysis