Hb_019973_010

Information

Type -
Description -
Location Contig19973: 21222-23796
Sequence    

Annotation

kegg
ID rcu:RCOM_1315100
description ATP binding protein, putative
nr
ID XP_012086579.1
description PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
swissprot
ID Q9C884
description Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1
trembl
ID A0A067JMS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20343 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19985: 21273-23657 , PASA_asmbl_19986: 23704-24903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019973_010 0.0 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
2 Hb_000120_340 0.0766117928 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_004115_010 0.0773937766 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
4 Hb_000086_470 0.0858864907 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
5 Hb_000349_250 0.087624905 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
6 Hb_004202_030 0.0991832348 - - PREDICTED: uncharacterized protein LOC103449702 [Malus domestica]
7 Hb_003207_120 0.1019614529 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
8 Hb_000139_040 0.1040855786 - - spermine synthase, putative [Ricinus communis]
9 Hb_001571_080 0.1048252 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
10 Hb_004137_110 0.1078968752 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
11 Hb_002518_040 0.1081107458 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
12 Hb_001258_130 0.1087025278 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
13 Hb_006501_080 0.1089491114 - - PREDICTED: uncharacterized protein LOC105637775 [Jatropha curcas]
14 Hb_007237_020 0.1092147306 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
15 Hb_005977_080 0.1103934365 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
16 Hb_007313_030 0.1168518529 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
17 Hb_005890_020 0.1181218726 - - putative plant disease resistance family protein [Populus trichocarpa]
18 Hb_000027_160 0.1200074734 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
19 Hb_002301_400 0.1209988674 - - structural constituent of cell wall, putative [Ricinus communis]
20 Hb_004308_030 0.1214897871 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_019973_010 Hb_019973_010 Hb_000120_340 Hb_000120_340 Hb_019973_010--Hb_000120_340 Hb_004115_010 Hb_004115_010 Hb_019973_010--Hb_004115_010 Hb_000086_470 Hb_000086_470 Hb_019973_010--Hb_000086_470 Hb_000349_250 Hb_000349_250 Hb_019973_010--Hb_000349_250 Hb_004202_030 Hb_004202_030 Hb_019973_010--Hb_004202_030 Hb_003207_120 Hb_003207_120 Hb_019973_010--Hb_003207_120 Hb_003666_070 Hb_003666_070 Hb_000120_340--Hb_003666_070 Hb_000120_340--Hb_000086_470 Hb_007632_160 Hb_007632_160 Hb_000120_340--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_000120_340--Hb_011671_050 Hb_007237_020 Hb_007237_020 Hb_000120_340--Hb_007237_020 Hb_004115_010--Hb_000120_340 Hb_007313_030 Hb_007313_030 Hb_004115_010--Hb_007313_030 Hb_004115_010--Hb_000086_470 Hb_002518_040 Hb_002518_040 Hb_004115_010--Hb_002518_040 Hb_005890_020 Hb_005890_020 Hb_004115_010--Hb_005890_020 Hb_000086_470--Hb_007237_020 Hb_000086_470--Hb_004202_030 Hb_000086_470--Hb_007313_030 Hb_000086_470--Hb_007632_160 Hb_000627_040 Hb_000627_040 Hb_000086_470--Hb_000627_040 Hb_000027_160 Hb_000027_160 Hb_000349_250--Hb_000027_160 Hb_002053_180 Hb_002053_180 Hb_000349_250--Hb_002053_180 Hb_071674_010 Hb_071674_010 Hb_000349_250--Hb_071674_010 Hb_004223_080 Hb_004223_080 Hb_000349_250--Hb_004223_080 Hb_001571_080 Hb_001571_080 Hb_000349_250--Hb_001571_080 Hb_004202_030--Hb_003207_120 Hb_006501_080 Hb_006501_080 Hb_004202_030--Hb_006501_080 Hb_029262_010 Hb_029262_010 Hb_004202_030--Hb_029262_010 Hb_004308_030 Hb_004308_030 Hb_004202_030--Hb_004308_030 Hb_001519_090 Hb_001519_090 Hb_003207_120--Hb_001519_090 Hb_003207_120--Hb_002518_040 Hb_005977_080 Hb_005977_080 Hb_003207_120--Hb_005977_080 Hb_004137_110 Hb_004137_110 Hb_003207_120--Hb_004137_110 Hb_003207_120--Hb_000086_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.355071 2.11463 18.5614 10.5825 0.0275194 0.0726122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.721812 5.68625

CAGE analysis