Hb_001571_080

Information

Type -
Description -
Location Contig1571: 91169-93338
Sequence    

Annotation

kegg
ID rcu:RCOM_0266100
description lipid binding protein, putative
nr
ID XP_012084610.1
description PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
swissprot
ID Q8VYI9
description Non-specific lipid-transfer protein-like protein At5g64080 OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1
trembl
ID A0A067K538
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20199 PE=4 SV=1
Gene Ontology
ID GO:0046658
description non-specific lipid-transfer protein at5g64080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13717: 91191-93226 , PASA_asmbl_13720: 92463-110071 , PASA_asmbl_13721: 92737-92860
cDNA
(Sanger)
(ID:Location)		 004_D10.ab1: 91276-93226 , 021_F13.ab1: 91569-93226 , 040_N03.ab1: 91311-93226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001571_080 0.0 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
2 Hb_005568_140 0.0730484635 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001085_160 0.0817108185 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
4 Hb_002918_220 0.0865008387 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
5 Hb_007237_020 0.0961189594 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
6 Hb_027337_010 0.0993423934 - - Potassium transporter, putative [Ricinus communis]
7 Hb_000027_160 0.1022502193 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
8 Hb_019973_010 0.1048252 - - PREDICTED: probable methyltransferase PMT18 isoform X2 [Jatropha curcas]
9 Hb_000830_010 0.1057847176 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002311_500 0.1063401389 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
11 Hb_004109_100 0.1066028807 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
12 Hb_000086_470 0.1075528139 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
13 Hb_000349_250 0.1087403884 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
14 Hb_001439_240 0.1096604129 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
15 Hb_004223_080 0.1118479859 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_024714_090 0.1146704647 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
17 Hb_000120_340 0.1149746758 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_004115_010 0.1152157058 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
19 Hb_004567_070 0.1158261839 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002817_030 0.1158740602 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]

Gene co-expression network

sample Hb_001571_080 Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_001571_080--Hb_005568_140 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_007237_020 Hb_007237_020 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_000027_160 Hb_000027_160 Hb_001571_080--Hb_000027_160 Hb_005568_140--Hb_002918_220 Hb_004109_100 Hb_004109_100 Hb_005568_140--Hb_004109_100 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_010267_020 Hb_010267_020 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030 Hb_024714_090 Hb_024714_090 Hb_001085_160--Hb_024714_090 Hb_000213_020 Hb_000213_020 Hb_001085_160--Hb_000213_020 Hb_000830_010 Hb_000830_010 Hb_001085_160--Hb_000830_010 Hb_004005_060 Hb_004005_060 Hb_001085_160--Hb_004005_060 Hb_001085_160--Hb_005568_140 Hb_002918_220--Hb_004109_100 Hb_002918_220--Hb_004422_030 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_002918_220--Hb_010267_020 Hb_000086_470 Hb_000086_470 Hb_007237_020--Hb_000086_470 Hb_000627_040 Hb_000627_040 Hb_007237_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_007237_020--Hb_002053_180 Hb_002490_060 Hb_002490_060 Hb_007237_020--Hb_002490_060 Hb_002817_030 Hb_002817_030 Hb_007237_020--Hb_002817_030 Hb_000120_340 Hb_000120_340 Hb_007237_020--Hb_000120_340 Hb_003992_130 Hb_003992_130 Hb_027337_010--Hb_003992_130 Hb_027337_010--Hb_002817_030 Hb_003626_020 Hb_003626_020 Hb_027337_010--Hb_003626_020 Hb_027337_010--Hb_002918_220 Hb_027337_010--Hb_005568_140 Hb_000349_250 Hb_000349_250 Hb_000027_160--Hb_000349_250 Hb_000027_160--Hb_024714_090 Hb_000027_160--Hb_002053_180 Hb_000027_160--Hb_000086_470 Hb_000905_100 Hb_000905_100 Hb_000027_160--Hb_000905_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45549 98.936 701.655 335.582 4.11775 2.97051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207618 0.0816437 0 51.9823 127.344

CAGE analysis