Hb_002918_220

Information

Type -
Description -
Location Contig2918: 209922-212561
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05630g
description hypothetical protein
nr
ID XP_011043428.1
description PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9N3J1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30621: 209926-212667 , PASA_asmbl_30622: 210876-212484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_220 0.0 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
2 Hb_005568_140 0.0485392982 - - ATP binding protein, putative [Ricinus communis]
3 Hb_004109_100 0.0724929646 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
4 Hb_004422_030 0.0781697585 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
5 Hb_001571_080 0.0865008387 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
6 Hb_001439_240 0.0887799226 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
7 Hb_010267_020 0.0911018389 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
8 Hb_027337_010 0.0944130895 - - Potassium transporter, putative [Ricinus communis]
9 Hb_002170_060 0.1014542443 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
10 Hb_003992_130 0.1020531413 - - unnamed protein product [Vitis vinifera]
11 Hb_000200_270 0.1024075211 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
12 Hb_000830_010 0.1032676623 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000340_550 0.1041819301 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
14 Hb_003777_260 0.1055053575 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
15 Hb_002243_030 0.1076082553 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
16 Hb_169753_010 0.109659709 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
17 Hb_012753_150 0.1113627191 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
18 Hb_000316_070 0.1117218151 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
19 Hb_015299_040 0.1132969118 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
20 Hb_000038_070 0.1147297001 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002918_220 Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_002918_220--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_002918_220--Hb_004109_100 Hb_004422_030 Hb_004422_030 Hb_002918_220--Hb_004422_030 Hb_001571_080 Hb_001571_080 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_010267_020 Hb_010267_020 Hb_002918_220--Hb_010267_020 Hb_005568_140--Hb_004109_100 Hb_005568_140--Hb_001571_080 Hb_002170_060 Hb_002170_060 Hb_005568_140--Hb_002170_060 Hb_005568_140--Hb_010267_020 Hb_005568_140--Hb_004422_030 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_004225_160 Hb_004225_160 Hb_004422_030--Hb_004225_160 Hb_000083_280 Hb_000083_280 Hb_004422_030--Hb_000083_280 Hb_004422_030--Hb_001439_240 Hb_039812_010 Hb_039812_010 Hb_004422_030--Hb_039812_010 Hb_004422_030--Hb_010267_020 Hb_001085_160 Hb_001085_160 Hb_001571_080--Hb_001085_160 Hb_007237_020 Hb_007237_020 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_000027_160 Hb_000027_160 Hb_001571_080--Hb_000027_160 Hb_002053_100 Hb_002053_100 Hb_001439_240--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_001439_240--Hb_000830_010 Hb_000340_550 Hb_000340_550 Hb_001439_240--Hb_000340_550 Hb_181744_010 Hb_181744_010 Hb_001439_240--Hb_181744_010 Hb_005276_190 Hb_005276_190 Hb_001439_240--Hb_005276_190 Hb_001439_240--Hb_003777_260 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_010267_020--Hb_005695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.399354 5.26238 61.0667 20.8046 0.0681559 0.0484621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0839078 0 0 3.9766 7.41148

CAGE analysis