Hb_005695_070

Information

Type -
Description -
Location Contig5695: 58194-76179
Sequence    

Annotation

kegg
ID tcc:TCM_030102
description Cysteine-rich RLK 29
nr
ID XP_007025939.1
description Cysteine-rich RLK 29 [Theobroma cacao]
swissprot
ID Q8S9L6
description Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1
trembl
ID A0A061GG78
description Cysteine-rich RLK 29 OS=Theobroma cacao GN=TCM_030102 PE=4 SV=1
Gene Ontology
ID GO:0016740
description cysteine-rich receptor-like protein kinase 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49265: 58263-59487 , PASA_asmbl_49266: 68762-69055 , PASA_asmbl_49267: 70157-71014 , PASA_asmbl_49268: 73157-73469 , PASA_asmbl_49269: 73566-73737 , PASA_asmbl_49271: 74433-75061 , PASA_asmbl_49272: 75313-76398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_070 0.0 - - Cysteine-rich RLK 29 [Theobroma cacao]
2 Hb_149985_030 0.0763477471 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
3 Hb_001001_010 0.0864923531 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
4 Hb_000349_170 0.0887617841 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
5 Hb_010267_020 0.0990975268 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
6 Hb_000200_270 0.1050546291 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
7 Hb_022406_010 0.1093750646 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001913_070 0.1157246785 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
9 Hb_009421_090 0.1176250934 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
10 Hb_010407_150 0.1199423246 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
11 Hb_003935_050 0.1199444563 - - protein with unknown function [Ricinus communis]
12 Hb_002205_160 0.123914686 - - chalcone isomerase [Hibiscus cannabinus]
13 Hb_169753_010 0.1319624467 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
14 Hb_002311_500 0.1333476228 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
15 Hb_000856_230 0.1349267866 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
16 Hb_000388_040 0.1362015184 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
17 Hb_004567_070 0.1364129355 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007441_290 0.1364440308 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
19 Hb_014700_020 0.1374103734 - - tryptophan synthase beta chain, putative [Ricinus communis]
20 Hb_001143_200 0.1389204113 transcription factor TF Family: NAC NAC domain protein [Glycine max]

Gene co-expression network

sample Hb_005695_070 Hb_005695_070 Hb_149985_030 Hb_149985_030 Hb_005695_070--Hb_149985_030 Hb_001001_010 Hb_001001_010 Hb_005695_070--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_005695_070--Hb_000349_170 Hb_010267_020 Hb_010267_020 Hb_005695_070--Hb_010267_020 Hb_000200_270 Hb_000200_270 Hb_005695_070--Hb_000200_270 Hb_022406_010 Hb_022406_010 Hb_005695_070--Hb_022406_010 Hb_149985_030--Hb_022406_010 Hb_149985_030--Hb_000349_170 Hb_001913_070 Hb_001913_070 Hb_149985_030--Hb_001913_070 Hb_001606_040 Hb_001606_040 Hb_149985_030--Hb_001606_040 Hb_103709_010 Hb_103709_010 Hb_149985_030--Hb_103709_010 Hb_010407_150 Hb_010407_150 Hb_001001_010--Hb_010407_150 Hb_001001_010--Hb_149985_030 Hb_001001_010--Hb_000349_170 Hb_002995_010 Hb_002995_010 Hb_001001_010--Hb_002995_010 Hb_007076_010 Hb_007076_010 Hb_001001_010--Hb_007076_010 Hb_000349_170--Hb_001913_070 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000388_040 Hb_000388_040 Hb_000349_170--Hb_000388_040 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_002918_220 Hb_002918_220 Hb_010267_020--Hb_002918_220 Hb_005568_140 Hb_005568_140 Hb_010267_020--Hb_005568_140 Hb_004422_030 Hb_004422_030 Hb_010267_020--Hb_004422_030 Hb_000856_230 Hb_000856_230 Hb_000200_270--Hb_000856_230 Hb_000200_270--Hb_002918_220 Hb_002311_500 Hb_002311_500 Hb_000200_270--Hb_002311_500 Hb_009421_090 Hb_009421_090 Hb_000200_270--Hb_009421_090 Hb_022406_010--Hb_001606_040 Hb_006519_020 Hb_006519_020 Hb_022406_010--Hb_006519_020 Hb_012084_010 Hb_012084_010 Hb_022406_010--Hb_012084_010 Hb_022406_010--Hb_169753_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.7701 13.5433 2.54144 0 0.00370719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00926872 0.00729436 0.0140334 0.560155 1.42512

CAGE analysis