Hb_000388_040

Information

Type -
Description -
Location Contig388: 83377-83853
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08830g
description POPTRDRAFT_648111; putative calmodulin-related family protein
nr
ID XP_012077786.1
description PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
swissprot
ID Q9C8Y1
description Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1
trembl
ID A0A067KA96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13426 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_040 0.0 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
2 Hb_003767_030 0.1033434664 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
3 Hb_012753_150 0.1083431734 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
4 Hb_000349_170 0.1124832975 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
5 Hb_002218_050 0.1162306092 - - SSXT family protein isoform 2, partial [Theobroma cacao]
6 Hb_010267_020 0.128012623 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
7 Hb_007441_290 0.1287454854 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
8 Hb_000115_190 0.1310895481 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
9 Hb_001396_040 0.1322258401 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
10 Hb_000215_150 0.1344366919 - - PREDICTED: uncharacterized protein LOC100249186 [Vitis vinifera]
11 Hb_001606_040 0.134605651 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
12 Hb_001143_200 0.1347305511 transcription factor TF Family: NAC NAC domain protein [Glycine max]
13 Hb_005695_070 0.1362015184 - - Cysteine-rich RLK 29 [Theobroma cacao]
14 Hb_003935_050 0.1375817626 - - protein with unknown function [Ricinus communis]
15 Hb_006519_020 0.1422442991 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_022406_010 0.142906393 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000028_250 0.1437201446 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
18 Hb_149985_030 0.1441331885 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
19 Hb_000020_080 0.1449572311 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
20 Hb_000200_270 0.1458150172 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000388_040 Hb_000388_040 Hb_003767_030 Hb_003767_030 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_000349_170 Hb_000349_170 Hb_000388_040--Hb_000349_170 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290 Hb_003767_030--Hb_000349_170 Hb_009421_090 Hb_009421_090 Hb_003767_030--Hb_009421_090 Hb_000283_090 Hb_000283_090 Hb_003767_030--Hb_000283_090 Hb_003767_030--Hb_010267_020 Hb_000809_220 Hb_000809_220 Hb_003767_030--Hb_000809_220 Hb_001761_010 Hb_001761_010 Hb_012753_150--Hb_001761_010 Hb_006060_010 Hb_006060_010 Hb_012753_150--Hb_006060_010 Hb_005568_140 Hb_005568_140 Hb_012753_150--Hb_005568_140 Hb_004109_100 Hb_004109_100 Hb_012753_150--Hb_004109_100 Hb_012753_150--Hb_010267_020 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_005695_070 Hb_005695_070 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_114292_010 Hb_114292_010 Hb_002218_050--Hb_114292_010 Hb_001040_050 Hb_001040_050 Hb_002218_050--Hb_001040_050 Hb_005162_120 Hb_005162_120 Hb_002218_050--Hb_005162_120 Hb_001143_200 Hb_001143_200 Hb_002218_050--Hb_001143_200 Hb_000115_190 Hb_000115_190 Hb_002218_050--Hb_000115_190 Hb_000200_270 Hb_000200_270 Hb_010267_020--Hb_000200_270 Hb_169753_010 Hb_169753_010 Hb_010267_020--Hb_169753_010 Hb_002918_220 Hb_002918_220 Hb_010267_020--Hb_002918_220 Hb_010267_020--Hb_005568_140 Hb_004422_030 Hb_004422_030 Hb_010267_020--Hb_004422_030 Hb_010267_020--Hb_005695_070 Hb_004650_040 Hb_004650_040 Hb_007441_290--Hb_004650_040 Hb_007441_290--Hb_169753_010 Hb_002205_160 Hb_002205_160 Hb_007441_290--Hb_002205_160 Hb_007441_290--Hb_012753_150 Hb_007441_290--Hb_010267_020 Hb_006519_020 Hb_006519_020 Hb_007441_290--Hb_006519_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7045 103.64 805.452 147.689 1.2729 8.53364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.80681 7.75456 5.73747 16.6709 76.7548

CAGE analysis