Hb_004650_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4650: 50787-52548
Sequence    

Annotation

kegg
ID rcu:RCOM_1032360
description nucleic acid binding protein, putative
nr
ID XP_012078173.1
description PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K976
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12053 PE=4 SV=1
Gene Ontology
ID GO:0003950
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44023: 50778-52606 , PASA_asmbl_44024: 51305-52154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004650_040 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
2 Hb_007441_290 0.0910223764 - - PREDICTED: uncharacterized protein LOC105643262 [Jatropha curcas]
3 Hb_002205_160 0.1180373662 - - chalcone isomerase [Hibiscus cannabinus]
4 Hb_169753_010 0.1214389179 - - hypothetical protein JCGZ_18439 [Jatropha curcas]
5 Hb_007632_200 0.135447558 - - hypothetical protein L484_018221 [Morus notabilis]
6 Hb_001143_200 0.1364826298 transcription factor TF Family: NAC NAC domain protein [Glycine max]
7 Hb_022406_010 0.1473109255 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_001277_120 0.1479729185 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
9 Hb_002534_040 0.1481503529 - - Calmodulin, putative [Ricinus communis]
10 Hb_003935_050 0.1546213388 - - protein with unknown function [Ricinus communis]
11 Hb_000413_220 0.1555869916 - - PREDICTED: kinesin-1 [Jatropha curcas]
12 Hb_005695_070 0.1565548872 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_006519_020 0.1565709834 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
14 Hb_000280_100 0.1584885425 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
15 Hb_000668_190 0.1591653029 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
16 Hb_150745_010 0.1614320892 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
17 Hb_000340_070 0.1619743546 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
18 Hb_001040_050 0.1621937302 - - Stem-specific protein TSJT1, putative [Ricinus communis]
19 Hb_002874_120 0.1630597872 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
20 Hb_007101_250 0.1647295635 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004650_040 Hb_004650_040 Hb_007441_290 Hb_007441_290 Hb_004650_040--Hb_007441_290 Hb_002205_160 Hb_002205_160 Hb_004650_040--Hb_002205_160 Hb_169753_010 Hb_169753_010 Hb_004650_040--Hb_169753_010 Hb_007632_200 Hb_007632_200 Hb_004650_040--Hb_007632_200 Hb_001143_200 Hb_001143_200 Hb_004650_040--Hb_001143_200 Hb_022406_010 Hb_022406_010 Hb_004650_040--Hb_022406_010 Hb_007441_290--Hb_169753_010 Hb_007441_290--Hb_002205_160 Hb_012753_150 Hb_012753_150 Hb_007441_290--Hb_012753_150 Hb_010267_020 Hb_010267_020 Hb_007441_290--Hb_010267_020 Hb_006519_020 Hb_006519_020 Hb_007441_290--Hb_006519_020 Hb_002205_160--Hb_169753_010 Hb_000035_150 Hb_000035_150 Hb_002205_160--Hb_000035_150 Hb_003992_130 Hb_003992_130 Hb_002205_160--Hb_003992_130 Hb_007951_020 Hb_007951_020 Hb_002205_160--Hb_007951_020 Hb_002205_160--Hb_022406_010 Hb_169753_010--Hb_010267_020 Hb_169753_010--Hb_006519_020 Hb_004007_080 Hb_004007_080 Hb_169753_010--Hb_004007_080 Hb_004422_030 Hb_004422_030 Hb_169753_010--Hb_004422_030 Hb_001040_050 Hb_001040_050 Hb_007632_200--Hb_001040_050 Hb_005839_080 Hb_005839_080 Hb_007632_200--Hb_005839_080 Hb_012633_010 Hb_012633_010 Hb_007632_200--Hb_012633_010 Hb_007632_200--Hb_006519_020 Hb_001102_030 Hb_001102_030 Hb_007632_200--Hb_001102_030 Hb_000042_020 Hb_000042_020 Hb_001143_200--Hb_000042_020 Hb_000280_100 Hb_000280_100 Hb_001143_200--Hb_000280_100 Hb_003935_050 Hb_003935_050 Hb_001143_200--Hb_003935_050 Hb_001143_200--Hb_001040_050 Hb_001143_200--Hb_007441_290 Hb_000388_040 Hb_000388_040 Hb_001143_200--Hb_000388_040 Hb_149985_030 Hb_149985_030 Hb_022406_010--Hb_149985_030 Hb_001606_040 Hb_001606_040 Hb_022406_010--Hb_001606_040 Hb_022406_010--Hb_006519_020 Hb_012084_010 Hb_012084_010 Hb_022406_010--Hb_012084_010 Hb_022406_010--Hb_169753_010 Hb_005695_070 Hb_005695_070 Hb_022406_010--Hb_005695_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0709263 1.10634 10.2146 1.32894 0 0.0152299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0268781 0 0.848516 0.336233

CAGE analysis